bioconductor.org "FlowCytometry" keyword
View the packages on the bioconductor.org package registry that are tagged with the "FlowCytometry" keyword.
scDataviz 1.18.0
scDataviz: single cell dataviz and downstream analyses5 versions - Latest release: 3 months ago - 9.35 thousand downloads total - 63 stars on GitHub - 1 maintainer
Top 2.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 6 dependent packages - 245 thousand downloads total - 1 maintainer
ncdfFlow 2.54.0
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.6 versions - Latest release: 3 months ago - 6 dependent packages - 245 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
8 versions - Latest release: 3 months ago - 3 dependent packages - 272 thousand downloads total - 1 maintainer
cytolib 2.20.0
C++ infrastructure for representing and interacting with the gated cytometry data8 versions - Latest release: 3 months ago - 3 dependent packages - 272 thousand downloads total - 1 maintainer
cytoKernel 1.14.0
Differential expression using kernel-based score test5 versions - Latest release: 3 months ago - 6.47 thousand downloads total - 0 stars on GitHub - 1 maintainer
Sconify 1.28.0
A toolkit for performing KNN-based statistics for flow and mass cytometry data5 versions - Latest release: 3 months ago - 11.8 thousand downloads total - 1 maintainer
GateFinder 1.28.0
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry5 versions - Latest release: 3 months ago - 12.2 thousand downloads total - 1 maintainer
flowVS 1.40.0
Variance stabilization in flow cytometry (and microarrays)5 versions - Latest release: 3 months ago - 21.6 thousand downloads total - 1 maintainer
MACSQuantifyR 1.22.0
Fast treatment of MACSQuantify FACS data5 versions - Latest release: 3 months ago - 7.76 thousand downloads total - 1 maintainer
Top 7.8% on bioconductor.org
5 versions - Latest release: 3 months ago - 3 dependent packages - 44.5 thousand downloads total - 1 maintainer
flowDensity 1.42.0
Sequential Flow Cytometry Data Gating5 versions - Latest release: 3 months ago - 3 dependent packages - 44.5 thousand downloads total - 1 maintainer
flowTime 1.32.0
Annotation and analysis of biological dynamical systems using flow cytometry5 versions - Latest release: 3 months ago - 14.4 thousand downloads total - 1 maintainer
Top 2.3% on bioconductor.org
9 versions - Latest release: 3 months ago - 13 dependent packages - 296 thousand downloads total - 2 maintainers
flowWorkspace 4.20.0
Infrastructure for representing and interacting with gated and ungated cytometry data sets.9 versions - Latest release: 3 months ago - 13 dependent packages - 296 thousand downloads total - 2 maintainers
Top 8.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 34.7 thousand downloads total - 1 maintainer
flowTrans 1.60.0
Parameter Optimization for Flow Cytometry Data Transformation5 versions - Latest release: 3 months ago - 34.7 thousand downloads total - 1 maintainer
Top 4.0% on bioconductor.org
7 versions - Latest release: 3 months ago - 3 dependent packages - 107 thousand downloads total - 31 stars on GitHub - 1 maintainer
CytoML 2.20.0
A GatingML Interface for Cross Platform Cytometry Data Sharing7 versions - Latest release: 3 months ago - 3 dependent packages - 107 thousand downloads total - 31 stars on GitHub - 1 maintainer
Top 9.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 35.2 thousand downloads total - 1 maintainer
flowClean 1.46.0
flowClean5 versions - Latest release: 3 months ago - 35.2 thousand downloads total - 1 maintainer
MetaCyto 1.30.0
MetaCyto: A package for meta-analysis of cytometry data5 versions - Latest release: 3 months ago - 14.5 thousand downloads total - 1 maintainer
flowGate 1.8.0
Interactive Cytometry Gating in R5 versions - Latest release: 3 months ago - 5.46 thousand downloads total - 1 maintainer
flowCut 1.18.0
Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis5 versions - Latest release: 3 months ago - 11.6 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 7 dependent packages - 177 thousand downloads total - 2 maintainers
flowClust 3.46.0
Clustering for Flow Cytometry5 versions - Latest release: 3 months ago - 7 dependent packages - 177 thousand downloads total - 2 maintainers
Top 5.7% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 66.8 thousand downloads total - 1 maintainer
flowAI 1.38.0
Automatic and interactive quality control for flow cytometry data5 versions - Latest release: 3 months ago - 1 dependent package - 66.8 thousand downloads total - 1 maintainer
Top 7.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 42 thousand downloads total - 1 maintainer
flowMerge 2.56.0
Cluster Merging for Flow Cytometry Data5 versions - Latest release: 3 months ago - 1 dependent package - 42 thousand downloads total - 1 maintainer
spillR 1.4.0
Spillover Compensation in Mass Cytometry Data5 versions - Latest release: 3 months ago - 3.45 thousand downloads total - 1 maintainer
flowMeans 1.68.0
Non-parametric Flow Cytometry Data Gating5 versions - Latest release: 3 months ago - 2 dependent packages - 52.9 thousand downloads total - 1 maintainer
Top 7.7% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 41.2 thousand downloads total - 2 maintainers
flowFP 1.66.0
Fingerprinting for Flow Cytometry5 versions - Latest release: 3 months ago - 2 dependent packages - 41.2 thousand downloads total - 2 maintainers
cydar 1.32.1
Using Mass Cytometry for Differential Abundance Analyses6 versions - Latest release: 2 months ago - 18.1 thousand downloads total - 1 maintainer
quantiseqr 1.16.0
Quantification of the Tumor Immune contexture from RNA-seq data5 versions - Latest release: 3 months ago - 2 dependent packages - 26.1 thousand downloads total - 1 maintainer
Top 0.8% on bioconductor.org
7 versions - Latest release: 3 months ago - 51 dependent packages - 4.84 million downloads total - 1 maintainer
flowCore 2.20.0
flowCore: Basic structures for flow cytometry data7 versions - Latest release: 3 months ago - 51 dependent packages - 4.84 million downloads total - 1 maintainer
diffcyt 1.28.0
Differential discovery in high-dimensional cytometry via high-resolution clustering7 versions - Latest release: 3 months ago - 5 dependent packages - 39.2 thousand downloads total - 20 stars on GitHub - 1 maintainer
PeacoQC 1.18.0
Peak-based selection of high quality cytometry data5 versions - Latest release: 3 months ago - 1 dependent package - 14.5 thousand downloads total - 14 stars on GitHub - 1 maintainer
Top 3.4% on bioconductor.org
5 versions - Latest release: 2 months ago - 3 dependent packages - 154 thousand downloads total - 1 maintainer
FlowSOM 2.16.0
Using self-organizing maps for visualization and interpretation of cytometry data5 versions - Latest release: 2 months ago - 3 dependent packages - 154 thousand downloads total - 1 maintainer
censcyt 1.16.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry5 versions - Latest release: 2 months ago - 6.91 thousand downloads total - 0 stars on GitHub - 1 maintainer
immunoClust 1.40.0
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry5 versions - Latest release: 2 months ago - 18.2 thousand downloads total - 1 maintainer
flowGraph 1.16.0
Identifying differential cell populations in flow cytometry data accounting for marker frequency5 versions - Latest release: 3 months ago - 7.12 thousand downloads total - 0 stars on GitHub - 1 maintainer
sccomp 2.0.0
Tests differences in cell-type proportion for single-cell data, robust to outliers5 versions - Latest release: 3 months ago - 7.66 thousand downloads total - 107 stars on GitHub - 1 maintainer
MAPFX 1.4.0
MAssively Parallel Flow cytometry Xplorer (MAPFX): A Toolbox for Analysing Data from the Massivel...3 versions - Latest release: 2 months ago - 3.17 thousand downloads total - 1 stars on GitHub - 1 maintainer
CytoPipelineGUI 1.6.0
GUI's for visualization of flow cytometry data analysis pipelines4 versions - Latest release: 3 months ago - 3.96 thousand downloads total - 2 stars on GitHub - 1 maintainer
CytoPipeline 1.8.0
Automation and visualization of flow cytometry data analysis pipelines5 versions - Latest release: 3 months ago - 2 dependent packages - 5.66 thousand downloads total - 5 stars on GitHub - 1 maintainer
tidytof 1.2.0
Analyze High-dimensional Cytometry Data Using Tidy Data Principles2 versions - Latest release: 3 months ago - 2.04 thousand downloads total - 19 stars on GitHub - 1 maintainer
scifer 1.10.0
Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences6 versions - Latest release: 2 months ago - 5.28 thousand downloads total - 5 stars on GitHub - 1 maintainer
flowBin 1.44.0
Combining multitube flow cytometry data by binning5 versions - Latest release: 2 months ago - 21.6 thousand downloads total - 1 maintainer
CytoMDS 1.4.0
Low Dimensions projection of cytometry samples3 versions - Latest release: 3 months ago - 3.36 thousand downloads total - 1 stars on GitHub - 1 maintainer
infinityFlow 1.18.0
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions5 versions - Latest release: 3 months ago - 8.65 thousand downloads total - 1 maintainer
plotGrouper 1.26.0
Shiny app GUI wrapper for ggplot with built-in statistical analysis5 versions - Latest release: 3 months ago - 9.69 thousand downloads total - 6 stars on GitHub - 1 maintainer
tidyFlowCore 1.2.0
tidyFlowCore: Bringing flowCore to the tidyverse2 versions - Latest release: 3 months ago - 2.28 thousand downloads total - 2 stars on GitHub - 1 maintainer
CytoGLMM 1.16.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments5 versions - Latest release: 3 months ago - 1 dependent package - 7.55 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 4.9% on bioconductor.org
8 versions - Latest release: 3 months ago - 5 dependent packages - 63.4 thousand downloads total - 68 stars on GitHub - 1 maintainer
CATALYST 1.32.0
Cytometry dATa anALYSis Tools8 versions - Latest release: 3 months ago - 5 dependent packages - 63.4 thousand downloads total - 68 stars on GitHub - 1 maintainer
cyanoFilter 1.16.0
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity5 versions - Latest release: 3 months ago - 8.48 thousand downloads total - 0 stars on GitHub - 1 maintainer
optimalFlow 1.20.0
optimalFlow5 versions - Latest release: 3 months ago - 7.9 thousand downloads total - 1 maintainer
flowBeads 1.46.0
flowBeads: Analysis of flow bead data5 versions - Latest release: 3 months ago - 23.1 thousand downloads total - 1 maintainer
flowSpecs 1.22.0
Tools for processing of high-dimensional cytometry data5 versions - Latest release: 3 months ago - 9.73 thousand downloads total - 6 stars on GitHub - 1 maintainer
CytoDx 1.28.0
Robust prediction of clinical outcomes using cytometry data without cell gating5 versions - Latest release: 3 months ago - 12.5 thousand downloads total - 1 maintainer
flowPloidy 1.34.0
Analyze flow cytometer data to determine sample ploidy5 versions - Latest release: 3 months ago - 14.2 thousand downloads total - 5 stars on GitHub - 1 maintainer
CyTOFpower 1.13.1
Power analysis for CyTOF experiments5 versions - Latest release: 3 months ago - 4.14 thousand downloads total - 1 maintainer
Top 3.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 9 dependent packages - 139 thousand downloads total - 59 stars on GitHub - 1 maintainer
ggcyto 1.36.0
Visualize Cytometry data with ggplot6 versions - Latest release: 3 months ago - 9 dependent packages - 139 thousand downloads total - 59 stars on GitHub - 1 maintainer
flowPlots 1.56.0
flowPlots: analysis plots and data class for gated flow cytometry data5 versions - Latest release: 3 months ago - 27.5 thousand downloads total - 1 maintainer
brainflowprobes 1.20.0 removed
Plots and annotation for choosing BrainFlow target probe sequence4 versions - Latest release: 8 months ago - 5.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
treekoR 1.16.0
Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations5 versions - Latest release: 3 months ago - 6.81 thousand downloads total - 1 maintainer
flowCHIC 1.42.0
Analyze flow cytometric data using histogram information5 versions - Latest release: 3 months ago - 20.1 thousand downloads total - 1 maintainer
COMPASS 1.46.0
Combinatorial Polyfunctionality Analysis of Single Cells5 versions - Latest release: 3 months ago - 24.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 2.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 9 dependent packages - 196 thousand downloads total - 14 stars on GitHub - 2 maintainers
flowStats 4.20.0
Statistical methods for the analysis of flow cytometry data6 versions - Latest release: 3 months ago - 9 dependent packages - 196 thousand downloads total - 14 stars on GitHub - 2 maintainers
flowCyBar 1.44.0
Analyze flow cytometric data using gate information5 versions - Latest release: 3 months ago - 20.1 thousand downloads total - 1 maintainer
DepecheR 1.24.0
Determination of essential phenotypic elements of clusters in high-dimensional entities5 versions - Latest release: 3 months ago - 1 dependent package - 21.8 thousand downloads total - 1 maintainer
distinct 1.20.0
distinct: a method for differential analyses via hierarchical permutation tests6 versions - Latest release: 3 months ago - 2 dependent packages - 14.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 7.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 37.3 thousand downloads total - 1 maintainer
SamSPECTRAL 1.62.0
Identifies cell population in flow cytometry data5 versions - Latest release: 3 months ago - 2 dependent packages - 37.3 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 36.3 thousand downloads total
flowPeaks 1.54.0
An R package for flow data clustering5 versions - Latest release: 3 months ago - 2 dependent packages - 36.3 thousand downloads total
Top 2.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 8 dependent packages - 161 thousand downloads total - 1 maintainer
openCyto 2.20.0
Hierarchical Gating Pipeline for flow cytometry data6 versions - Latest release: 3 months ago - 8 dependent packages - 161 thousand downloads total - 1 maintainer
Top 2.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 11 dependent packages - 302 thousand downloads total - 1 maintainer
flowViz 1.72.0
Visualization for flow cytometry5 versions - Latest release: 3 months ago - 11 dependent packages - 302 thousand downloads total - 1 maintainer
cytoMEM 1.12.0
Marker Enrichment Modeling (MEM)5 versions - Latest release: 3 months ago - 6.43 thousand downloads total - 0 stars on GitHub - 1 maintainer
flowMatch 1.44.0
Matching and meta-clustering in flow cytometry5 versions - Latest release: 3 months ago - 22.1 thousand downloads total - 1 maintainer
reconsi 1.20.0
Resampling Collapsed Null Distributions for Simultaneous Inference5 versions - Latest release: 3 months ago - 7.16 thousand downloads total - 2 stars on GitHub - 1 maintainer
oneSENSE 1.26.0 removed
One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)3 versions - Latest release: about 1 year ago - 7.09 thousand downloads total - 1 maintainer
flowMap 1.42.0 removed
Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-R...3 versions - Latest release: about 1 year ago - 18.4 thousand downloads total - 1 maintainer
MIMOSA 1.37.0 removed
Mixture Models for Single-Cell Assays1 version - Latest release: almost 2 years ago - 15.6 thousand downloads total - 1 maintainer
Related Keywords
Software
72
ImmunoOncology
51
CellBasedAssays
26
Visualization
23
Clustering
23
SingleCell
22
Preprocessing
13
CellBiology
12
DataImport
12
StatisticalMethod
11
DataRepresentation
10
Proteomics
8
QualityControl
8
DifferentialExpression
6
MultipleComparison
6
Infrastructure
5
Regression
5
GUI
5
Classification
4
FeatureExtraction
4
Transcription
4
MassSpectrometry
4
GeneExpression
4
Normalization
3
bioconductor
3
DimensionReduction
3
WorkflowStep
3
RNASeq
3
Transcriptomics
3
Sequencing
3
rstats
2
single-cell
2
Metagenomics
2
Survival
2
ExperimentalDesign
2
GeneTarget
2
Cancer
2
OneChannel
2
Microarray
2
r
1
DensityGating
1
tidyverse
1
SangerSeq
1
MultidimensionalScaling
1
GraphAndNetwork
1
Bioinformatics
1
ggplot2
1
plotting
1
shiny
1
Technology
1
evolution
1
flow-cytometry
1
polyploidy
1
Coverage
1
Genetics
1
HIV
1
StemCells
1
Gating
1
SystemsBiology
1
Microbiome
1
ExperimentHubSoftware
1
Annotation
1
BiomedicalInformatics
1
PeakDetection
1
TimeCourse
1
Bayesian
1
StemCell
1
Spatial
1
batch-correction
1
bayesian
1
composition
1
cytof
1
differential-proportion
1
microbiome
1
multilevel
1
proportions
1
r-package
1
random-effects
1
FlowCytData
1
unwanted-variation
1
ShinyApps
1
bioinformatics
1
cytometry
1
data-science
1