Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "FlowCytometry" keyword
infinityFlow 1.12.0
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions3 versions - Latest release: 6 months ago - 4.46 thousand downloads total - 1 maintainer
quantiseqr 1.10.0
Quantification of the Tumor Immune contexture from RNA-seq data3 versions - Latest release: 6 months ago - 2 dependent packages - 11.8 thousand downloads total - 1 maintainer
CyTOFpower 1.8.0
Power analysis for CyTOF experiments3 versions - Latest release: 6 months ago - 2.32 thousand downloads total - 1 maintainer
COMPASS 1.40.0
Combinatorial Polyfunctionality Analysis of Single Cells3 versions - Latest release: 6 months ago - 20 thousand downloads total - 6 stars on GitHub - 1 maintainer
cydar 1.26.0
Using Mass Cytometry for Differential Abundance Analyses3 versions - Latest release: 6 months ago - 13.2 thousand downloads total - 1 maintainer
flowVS 1.34.0
Variance stabilization in flow cytometry (and microarrays)3 versions - Latest release: 6 months ago - 16 thousand downloads total - 1 maintainer
flowGate 1.2.0
Interactive Cytometry Gating in R3 versions - Latest release: 6 months ago - 1.55 thousand downloads total - 1 maintainer
optimalFlow 1.14.0
optimalFlow3 versions - Latest release: 6 months ago - 4.08 thousand downloads total - 1 maintainer
flowBeads 1.40.0
flowBeads: Analysis of flow bead data3 versions - Latest release: 6 months ago - 18.4 thousand downloads total - 1 maintainer
treekoR 1.10.0
Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations3 versions - Latest release: 6 months ago - 2.99 thousand downloads total - 1 maintainer
flowCut 1.12.0
Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis3 versions - Latest release: 6 months ago - 6.64 thousand downloads total - 1 maintainer
flowMeans 1.62.0
Non-parametric Flow Cytometry Data Gating3 versions - Latest release: 6 months ago - 2 dependent packages - 45.4 thousand downloads total - 1 maintainer
flowPlots 1.50.0
flowPlots: analysis plots and data class for gated flow cytometry data3 versions - Latest release: 6 months ago - 23.7 thousand downloads total - 1 maintainer
immunoClust 1.34.0
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry3 versions - Latest release: 6 months ago - 13.4 thousand downloads total - 1 maintainer
CytoDx 1.22.0
Robust prediction of clinical outcomes using cytometry data without cell gating3 versions - Latest release: 6 months ago - 7.94 thousand downloads total - 1 maintainer
cytoKernel 1.8.0
Differential expression using kernel-based score test3 versions - Latest release: 6 months ago - 2.32 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 7.3% on bioconductor.org
3 versions - Latest release: 6 months ago - 1 dependent package - 36.6 thousand downloads total - 1 maintainer
flowMerge 2.50.0
Cluster Merging for Flow Cytometry Data3 versions - Latest release: 6 months ago - 1 dependent package - 36.6 thousand downloads total - 1 maintainer
flowMatch 1.38.0
Matching and meta-clustering in flow cytometry3 versions - Latest release: 6 months ago - 17.5 thousand downloads total - 1 maintainer
Top 7.8% on bioconductor.org
3 versions - Latest release: 6 months ago - 3 dependent packages - 36.6 thousand downloads total - 1 maintainer
flowDensity 1.36.1
Sequential Flow Cytometry Data Gating3 versions - Latest release: 6 months ago - 3 dependent packages - 36.6 thousand downloads total - 1 maintainer
flowMap 1.40.0
Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-R...3 versions - Latest release: 6 months ago - 18.1 thousand downloads total - 1 maintainer
flowCyBar 1.38.0
Analyze flow cytometric data using gate information3 versions - Latest release: 6 months ago - 16.4 thousand downloads total - 1 maintainer
flowCHIC 1.36.0
Analyze flow cytometric data using histogram information3 versions - Latest release: 6 months ago - 15.6 thousand downloads total - 1 maintainer
MACSQuantifyR 1.16.0
Fast treatment of MACSQuantify FACS data3 versions - Latest release: 6 months ago - 4.32 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
3 versions - Latest release: 6 months ago - 28.4 thousand downloads total - 1 maintainer
flowClean 1.40.0
flowClean3 versions - Latest release: 6 months ago - 28.4 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
3 versions - Latest release: 6 months ago - 2 dependent packages - 30.4 thousand downloads total
flowPeaks 1.48.0
An R package for flow data clustering3 versions - Latest release: 6 months ago - 2 dependent packages - 30.4 thousand downloads total
MetaCyto 1.24.0
MetaCyto: A package for meta-analysis of cytometry data3 versions - Latest release: 6 months ago - 9.82 thousand downloads total - 1 maintainer
DepecheR 1.18.0
Determination of essential phenotypic elements of clusters in high-dimensional entities3 versions - Latest release: 6 months ago - 1 dependent package - 16 thousand downloads total - 1 maintainer
flowSpecs 1.16.0
Tools for processing of high-dimensional cytometry data3 versions - Latest release: 6 months ago - 5.55 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 8.9% on bioconductor.org
3 versions - Latest release: 6 months ago - 29.5 thousand downloads total - 1 maintainer
flowTrans 1.54.0
Parameter Optimization for Flow Cytometry Data Transformation3 versions - Latest release: 6 months ago - 29.5 thousand downloads total - 1 maintainer
Sconify 1.22.0
A toolkit for performing KNN-based statistics for flow and mass cytometry data3 versions - Latest release: 6 months ago - 7.2 thousand downloads total - 1 maintainer
flowBin 1.38.0
Combining multitube flow cytometry data by binning3 versions - Latest release: 6 months ago - 17.2 thousand downloads total - 1 maintainer
scDataviz 1.12.0
scDataviz: single cell dataviz and downstream analyses3 versions - Latest release: 6 months ago - 4.86 thousand downloads total - 56 stars on GitHub - 1 maintainer
Top 7.6% on bioconductor.org
3 versions - Latest release: 6 months ago - 2 dependent packages - 32.1 thousand downloads total - 1 maintainer
SamSPECTRAL 1.56.0
Identifies cell population in flow cytometry data3 versions - Latest release: 6 months ago - 2 dependent packages - 32.1 thousand downloads total - 1 maintainer
GateFinder 1.22.0
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry3 versions - Latest release: 6 months ago - 7.81 thousand downloads total - 1 maintainer
flowTime 1.26.0
Annotation and analysis of biological dynamical systems using flow cytometry3 versions - Latest release: 6 months ago - 9.36 thousand downloads total - 1 maintainer
oneSENSE 1.24.0
One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)3 versions - Latest release: 6 months ago - 6.71 thousand downloads total - 1 maintainer
Top 7.7% on bioconductor.org
3 versions - Latest release: 6 months ago - 2 dependent packages - 34.9 thousand downloads total - 2 maintainers
flowFP 1.60.0
Fingerprinting for Flow Cytometry3 versions - Latest release: 6 months ago - 2 dependent packages - 34.9 thousand downloads total - 2 maintainers
cyanoFilter 1.10.0
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity3 versions - Latest release: 6 months ago - 2.88 thousand downloads total - 0 stars on GitHub - 1 maintainer
cytoMEM 1.6.0
Marker Enrichment Modeling (MEM)3 versions - Latest release: 6 months ago - 2.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
diffcyt 1.22.1
Differential discovery in high-dimensional cytometry via high-resolution clustering4 versions - Latest release: about 1 month ago - 5 dependent packages - 26.6 thousand downloads total - 18 stars on GitHub - 1 maintainer
flowGraph 1.10.0
Identifying differential cell populations in flow cytometry data accounting for marker frequency3 versions - Latest release: 6 months ago - 3.23 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 4.0% on bioconductor.org
3 versions - Latest release: 5 days ago - 3 dependent packages - 92.8 thousand downloads total - 27 stars on GitHub - 1 maintainer
CytoML 2.16.0
A GatingML Interface for Cross Platform Cytometry Data Sharing3 versions - Latest release: 5 days ago - 3 dependent packages - 92.8 thousand downloads total - 27 stars on GitHub - 1 maintainer
Top 0.8% on bioconductor.org
5 versions - Latest release: 19 days ago - 51 dependent packages - 4.77 million downloads total - 1 maintainer
flowCore 2.16.0
flowCore: Basic structures for flow cytometry data5 versions - Latest release: 19 days ago - 51 dependent packages - 4.77 million downloads total - 1 maintainer
CytoPipeline 1.4.0
Automation and visualization of flow cytometry data analysis pipelines3 versions - Latest release: 12 days ago - 2 dependent packages - 1.79 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 4.9% on bioconductor.org
4 versions - Latest release: 18 days ago - 5 dependent packages - 46.6 thousand downloads total - 61 stars on GitHub - 1 maintainer
CATALYST 1.28.0
Cytometry dATa anALYSis Tools4 versions - Latest release: 18 days ago - 5 dependent packages - 46.6 thousand downloads total - 61 stars on GitHub - 1 maintainer
reconsi 1.16.0
Resampling Collapsed Null Distributions for Simultaneous Inference3 versions - Latest release: 11 days ago - 3.89 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 5.7% on bioconductor.org
3 versions - Latest release: 12 days ago - 1 dependent package - 52.1 thousand downloads total - 1 maintainer
flowAI 1.34.0
Automatic and interactive quality control for flow cytometry data3 versions - Latest release: 12 days ago - 1 dependent package - 52.1 thousand downloads total - 1 maintainer
Top 2.2% on bioconductor.org
3 versions - Latest release: 12 days ago - 11 dependent packages - 280 thousand downloads total - 1 maintainer
flowViz 1.68.0
Visualization for flow cytometry3 versions - Latest release: 12 days ago - 11 dependent packages - 280 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
4 versions - Latest release: 13 days ago - 9 dependent packages - 183 thousand downloads total - 15 stars on GitHub - 2 maintainers
flowStats 4.16.0
Statistical methods for the analysis of flow cytometry data4 versions - Latest release: 13 days ago - 9 dependent packages - 183 thousand downloads total - 15 stars on GitHub - 2 maintainers
Top 2.3% on bioconductor.org
3 versions - Latest release: 13 days ago - 6 dependent packages - 218 thousand downloads total - 1 maintainer
ncdfFlow 2.50.0
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.3 versions - Latest release: 13 days ago - 6 dependent packages - 218 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
3 versions - Latest release: 13 days ago - 7 dependent packages - 157 thousand downloads total - 2 maintainers
flowClust 3.42.0
Clustering for Flow Cytometry3 versions - Latest release: 13 days ago - 7 dependent packages - 157 thousand downloads total - 2 maintainers
Top 2.9% on bioconductor.org
3 versions - Latest release: 13 days ago - 8 dependent packages - 144 thousand downloads total - 1 maintainer
openCyto 2.16.0
Hierarchical Gating Pipeline for flow cytometry data3 versions - Latest release: 13 days ago - 8 dependent packages - 144 thousand downloads total - 1 maintainer
Top 2.3% on bioconductor.org
6 versions - Latest release: 13 days ago - 13 dependent packages - 263 thousand downloads total - 2 maintainers
flowWorkspace 4.16.0
Infrastructure for representing and interacting with gated and ungated cytometry data sets.6 versions - Latest release: 13 days ago - 13 dependent packages - 263 thousand downloads total - 2 maintainers
Top 3.0% on bioconductor.org
4 versions - Latest release: 13 days ago - 3 dependent packages - 208 thousand downloads total - 1 maintainer
cytolib 2.16.0
C++ infrastructure for representing and interacting with the gated cytometry data4 versions - Latest release: 13 days ago - 3 dependent packages - 208 thousand downloads total - 1 maintainer
Top 3.4% on bioconductor.org
3 versions - Latest release: 13 days ago - 3 dependent packages - 128 thousand downloads total - 1 maintainer
FlowSOM 2.12.0
Using self-organizing maps for visualization and interpretation of cytometry data3 versions - Latest release: 13 days ago - 3 dependent packages - 128 thousand downloads total - 1 maintainer
CytoMDS 1.0.0
Low Dimensions projection of cytometry samples1 version - Latest release: 21 days ago - 233 downloads total - 2 stars on GitHub - 1 maintainer
Top 3.8% on bioconductor.org
4 versions - Latest release: 19 days ago - 9 dependent packages - 117 thousand downloads total - 53 stars on GitHub - 1 maintainer
ggcyto 1.32.0
Visualize Cytometry data with ggplot4 versions - Latest release: 19 days ago - 9 dependent packages - 117 thousand downloads total - 53 stars on GitHub - 1 maintainer
brainflowprobes 1.18.0
Plots and annotation for choosing BrainFlow target probe sequence3 versions - Latest release: 19 days ago - 4.96 thousand downloads total - 0 stars on GitHub - 1 maintainer
MAPFX 1.0.0
MAssively Parallel Flow cytometry Xplorer (MAPFX): A Toolbox for Analysing Data from the Massivel...1 version - Latest release: 21 days ago - 0 stars on GitHub - 1 maintainer
spillR 0.99.10
Spillover Compensation in Mass Cytometry Data1 version - Latest release: 21 days ago - 198 downloads total - 1 maintainer
distinct 1.14.5
distinct: a method for differential analyses via hierarchical permutation tests3 versions - Latest release: 5 months ago - 2 dependent packages - 8.28 thousand downloads total - 11 stars on GitHub - 1 maintainer
censcyt 1.10.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry2 versions - Latest release: 6 months ago - 3.07 thousand downloads total - 0 stars on GitHub - 1 maintainer
CytoGLMM 1.10.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments2 versions - Latest release: 6 months ago - 1 dependent package - 3.66 thousand downloads total - 2 stars on GitHub - 1 maintainer
CytoPipelineGUI 1.0.0
GUI's for visualization of flow cytometry data analysis pipelines1 version - Latest release: 7 months ago - 564 downloads total - 1 maintainer
PeacoQC 1.12.0
Peak-based selection of high quality cytometry data2 versions - Latest release: 6 months ago - 1 dependent package - 7.1 thousand downloads total - 14 stars on GitHub - 1 maintainer
plotGrouper 1.20.0
Shiny app GUI wrapper for ggplot with built-in statistical analysis2 versions - Latest release: 6 months ago - 5.85 thousand downloads total - 7 stars on GitHub - 1 maintainer
flowPloidy 1.28.0
Analyze flow cytometer data to determine sample ploidy2 versions - Latest release: 7 months ago - 9.98 thousand downloads total - 4 stars on GitHub - 1 maintainer
scifer 1.4.0
Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences2 versions - Latest release: 6 months ago - 1.33 thousand downloads total - 5 stars on GitHub - 1 maintainer
MIMOSA 1.37.0 removed
Mixture Models for Single-Cell Assays1 version - Latest release: 7 months ago - 15.6 thousand downloads total - 1 maintainer
Related Keywords
Software
69
ImmunoOncology
51
CellBasedAssays
26
Clustering
23
Visualization
23
SingleCell
19
Preprocessing
13
DataImport
12
CellBiology
12
StatisticalMethod
11
DataRepresentation
10
QualityControl
8
Proteomics
8
MultipleComparison
6
GUI
5
DifferentialExpression
5
GeneExpression
4
Transcription
4
FeatureExtraction
4
Regression
4
Classification
4
MassSpectrometry
4
Infrastructure
4
Normalization
3
DimensionReduction
3
RNASeq
3
WorkflowStep
3
bioconductor
3
Transcriptomics
3
Sequencing
3
GeneTarget
2
ExperimentalDesign
2
Cancer
2
OneChannel
2
Survival
2
Microarray
2
Coverage
1
ExperimentHubSoftware
1
Annotation
1
rstats
1
Genetics
1
ShinyApps
1
PeakDetection
1
GraphAndNetwork
1
ggplot2
1
plotting
1
shiny
1
evolution
1
flow-cytometry
1
polyploidy
1
SangerSeq
1
MultidimensionalScaling
1
BiomedicalInformatics
1
Microbiome
1
Metagenomics
1
SystemsBiology
1
TimeCourse
1
StemCells
1
HIV
1
Technology
1
Gating
1
Bioinformatics
1
StemCell
1
FlowCytData
1
DensityGating
1