bioconductor.org "FlowCytometry" keyword
infinityFlow 1.22.0
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions8 versions - Latest release: 5 months ago - 17.4 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
7 versions - Latest release: 5 months ago - 2 dependent packages - 43.5 thousand downloads total
flowPeaks 1.58.0
An R package for flow data clustering7 versions - Latest release: 5 months ago - 2 dependent packages - 43.5 thousand downloads total
distinct 1.24.1
distinct: a method for differential analyses via hierarchical permutation tests9 versions - Latest release: 2 months ago - 2 dependent packages - 25.8 thousand downloads total - 14 stars on GitHub - 1 maintainer
Top 0.8% on bioconductor.org
10 versions - Latest release: 5 months ago - 51 dependent packages - 5.02 million downloads total - 1 maintainer
flowCore 2.24.0
flowCore: Basic structures for flow cytometry data10 versions - Latest release: 5 months ago - 51 dependent packages - 5.02 million downloads total - 1 maintainer
scDataviz 1.22.0
scDataviz: single cell dataviz and downstream analyses7 versions - Latest release: 5 months ago - 19.6 thousand downloads total - 68 stars on GitHub - 1 maintainer
MDSvis 1.0.0
Plots of Multi Dimensional Scaling (MDS) results1 version - Latest release: 5 months ago - 2.99 thousand downloads total - 0 stars on GitHub - 1 maintainer
diffcyt 1.32.1
Differential discovery in high-dimensional cytometry via high-resolution clustering10 versions - Latest release: about 2 months ago - 5 dependent packages - 61.2 thousand downloads total - 25 stars on GitHub - 1 maintainer
staRgate 1.0.0
Automated gating pipeline for flow cytometry analysis to characterize the lineage, differentiatio...1 version - Latest release: 5 months ago - 3.92 thousand downloads total - 3 stars on GitHub - 1 maintainer
sccomp 2.4.0
Differential Composition and Variability Analysis for Single-Cell Data7 versions - Latest release: 4 months ago - 22.9 thousand downloads total - 134 stars on GitHub - 1 maintainer
Top 3.4% on bioconductor.org
7 versions - Latest release: 4 months ago - 3 dependent packages - 213 thousand downloads total - 1 maintainer
FlowSOM 2.20.0
Using self-organizing maps for visualization and interpretation of cytometry data7 versions - Latest release: 4 months ago - 3 dependent packages - 213 thousand downloads total - 1 maintainer
cyanoFilter 1.20.0
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity7 versions - Latest release: 4 months ago - 16.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
MACSQuantifyR 1.26.0
Fast treatment of MACSQuantify FACS data7 versions - Latest release: 5 months ago - 15 thousand downloads total - 1 maintainer
flowGraph 1.20.0
Identifying differential cell populations in flow cytometry data accounting for marker frequency7 versions - Latest release: 4 months ago - 13.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
CytoMDS 1.8.0
Low Dimensions projection of cytometry samples6 versions - Latest release: 5 months ago - 10 thousand downloads total - 1 stars on GitHub - 1 maintainer
CytoPipeline 1.12.0
Automation and visualization of flow cytometry data analysis pipelines7 versions - Latest release: 5 months ago - 2 dependent packages - 12.9 thousand downloads total - 7 stars on GitHub - 1 maintainer
MAPFX 1.8.0
MAssively Parallel Flow cytometry Xplorer (MAPFX): A Toolbox for Analysing Data from the Massivel...6 versions - Latest release: 4 months ago - 9.47 thousand downloads total - 1 stars on GitHub - 1 maintainer
CompensAID 1.0.0
Automated detection tool for spillover errors1 version - Latest release: 5 months ago - 3.61 thousand downloads total - 7 stars on GitHub - 1 maintainer
flowSpecs 1.26.0
Tools for processing of high-dimensional cytometry data7 versions - Latest release: 5 months ago - 18.8 thousand downloads total - 6 stars on GitHub - 1 maintainer
tidyFlowCore 1.6.0
tidyFlowCore: Bringing flowCore to the tidyverse4 versions - Latest release: 5 months ago - 7.53 thousand downloads total - 2 stars on GitHub - 1 maintainer
tidytof 1.6.0
Analyze High-dimensional Cytometry Data Using Tidy Data Principles4 versions - Latest release: 5 months ago - 3.42 thousand downloads total - 20 stars on GitHub - 1 maintainer
MetaCyto 1.34.0
MetaCyto: A package for meta-analysis of cytometry data7 versions - Latest release: 5 months ago - 22.6 thousand downloads total - 1 maintainer
plotGrouper 1.30.0
Shiny app GUI wrapper for ggplot with built-in statistical analysis7 versions - Latest release: 5 months ago - 16.6 thousand downloads total - 7 stars on GitHub - 1 maintainer
spillR 1.8.0
Spillover Compensation in Mass Cytometry Data7 versions - Latest release: 5 months ago - 9.02 thousand downloads total - 1 maintainer
CytoPipelineGUI 1.10.0
GUI's for visualization of flow cytometry data analysis pipelines6 versions - Latest release: 5 months ago - 9.83 thousand downloads total - 2 stars on GitHub - 1 maintainer
censcyt 1.20.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry7 versions - Latest release: 5 months ago - 14.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
PeacoQC 1.22.0
Peak-based selection of high quality cytometry data7 versions - Latest release: 5 months ago - 1 dependent package - 26.8 thousand downloads total - 22 stars on GitHub - 1 maintainer
Top 2.3% on bioconductor.org
8 versions - Latest release: 5 months ago - 6 dependent packages - 325 thousand downloads total - 1 maintainer
ncdfFlow 2.58.0
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.8 versions - Latest release: 5 months ago - 6 dependent packages - 325 thousand downloads total - 1 maintainer
flowCHIC 1.46.0
Analyze flow cytometric data using histogram information7 versions - Latest release: 4 months ago - 35.6 thousand downloads total - 1 maintainer
Top 7.8% on bioconductor.org
7 versions - Latest release: 5 months ago - 3 dependent packages - 70.2 thousand downloads total - 1 maintainer
flowDensity 1.46.0
Sequential Flow Cytometry Data Gating7 versions - Latest release: 5 months ago - 3 dependent packages - 70.2 thousand downloads total - 1 maintainer
cydar 1.36.0
Using Mass Cytometry for Differential Abundance Analyses8 versions - Latest release: 4 months ago - 35 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
8 versions - Latest release: 5 months ago - 9 dependent packages - 269 thousand downloads total - 15 stars on GitHub - 2 maintainers
flowStats 4.24.0
Statistical methods for the analysis of flow cytometry data8 versions - Latest release: 5 months ago - 9 dependent packages - 269 thousand downloads total - 15 stars on GitHub - 2 maintainers
cytoMEM 1.16.0
Marker Enrichment Modeling (MEM)7 versions - Latest release: 3 months ago - 17.5 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 3.8% on bioconductor.org
10 versions - Latest release: 4 months ago - 9 dependent packages - 217 thousand downloads total - 66 stars on GitHub - 1 maintainer
ggcyto 1.40.0
Visualize Cytometry data with ggplot10 versions - Latest release: 4 months ago - 9 dependent packages - 217 thousand downloads total - 66 stars on GitHub - 1 maintainer
flowPlots 1.60.0
flowPlots: analysis plots and data class for gated flow cytometry data7 versions - Latest release: 5 months ago - 38.5 thousand downloads total - 1 maintainer
Sconify 1.32.0
A toolkit for performing KNN-based statistics for flow and mass cytometry data8 versions - Latest release: 5 months ago - 24 thousand downloads total - 1 maintainer
Top 5.7% on bioconductor.org
7 versions - Latest release: 4 months ago - 1 dependent package - 91.4 thousand downloads total - 1 maintainer
flowAI 1.42.0
Automatic and interactive quality control for flow cytometry data7 versions - Latest release: 4 months ago - 1 dependent package - 91.4 thousand downloads total - 1 maintainer
Top 7.7% on bioconductor.org
7 versions - Latest release: 5 months ago - 2 dependent packages - 62.9 thousand downloads total - 2 maintainers
flowFP 1.70.0
Fingerprinting for Flow Cytometry7 versions - Latest release: 5 months ago - 2 dependent packages - 62.9 thousand downloads total - 2 maintainers
flowMatch 1.48.0
Matching and meta-clustering in flow cytometry7 versions - Latest release: 5 months ago - 38.9 thousand downloads total - 1 maintainer
flowCyBar 1.48.0
Analyze flow cytometric data using gate information7 versions - Latest release: 4 months ago - 29.4 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
7 versions - Latest release: 5 months ago - 49.2 thousand downloads total - 1 maintainer
flowTrans 1.64.0
Parameter Optimization for Flow Cytometry Data Transformation7 versions - Latest release: 5 months ago - 49.2 thousand downloads total - 1 maintainer
GateFinder 1.32.0
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry7 versions - Latest release: 5 months ago - 23.9 thousand downloads total - 1 maintainer
brainflowprobes 1.20.0 removed
Plots and annotation for choosing BrainFlow target probe sequence4 versions - Latest release: almost 2 years ago - 5.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
flowTime 1.36.0
Annotation and analysis of biological dynamical systems using flow cytometry7 versions - Latest release: 5 months ago - 27.8 thousand downloads total - 1 maintainer
Top 7.6% on bioconductor.org
7 versions - Latest release: 4 months ago - 2 dependent packages - 51 thousand downloads total - 1 maintainer
SamSPECTRAL 1.66.0
Identifies cell population in flow cytometry data7 versions - Latest release: 4 months ago - 2 dependent packages - 51 thousand downloads total - 1 maintainer
DepecheR 1.28.0
Determination of essential phenotypic elements of clusters in high-dimensional entities7 versions - Latest release: 4 months ago - 1 dependent package - 34.5 thousand downloads total - 1 maintainer
Top 2.2% on bioconductor.org
7 versions - Latest release: 5 months ago - 11 dependent packages - 382 thousand downloads total - 1 maintainer
flowViz 1.76.0
Visualization for flow cytometry7 versions - Latest release: 5 months ago - 11 dependent packages - 382 thousand downloads total - 1 maintainer
CyTOFpower 1.18.1
Power analysis for CyTOF experiments9 versions - Latest release: 4 months ago - 14.2 thousand downloads total - 1 maintainer
flowGate 1.12.1
Interactive Cytometry Gating in R8 versions - Latest release: 3 months ago - 15.2 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
7 versions - Latest release: 5 months ago - 50.9 thousand downloads total - 1 maintainer
flowClean 1.50.0
flowClean7 versions - Latest release: 5 months ago - 50.9 thousand downloads total - 1 maintainer
quantiseqr 1.20.0
Quantification of the Tumor Immune contexture from RNA-seq data7 versions - Latest release: 4 months ago - 2 dependent packages - 55.3 thousand downloads total - 1 maintainer
flowMeans 1.72.0
Non-parametric Flow Cytometry Data Gating7 versions - Latest release: 4 months ago - 2 dependent packages - 72 thousand downloads total - 1 maintainer
Top 4.9% on bioconductor.org
12 versions - Latest release: 5 months ago - 5 dependent packages - 98.4 thousand downloads total - 75 stars on GitHub - 1 maintainer
CATALYST 1.36.0
Cytometry dATa anALYSis Tools12 versions - Latest release: 5 months ago - 5 dependent packages - 98.4 thousand downloads total - 75 stars on GitHub - 1 maintainer
CytoDx 1.32.0
Robust prediction of clinical outcomes using cytometry data without cell gating7 versions - Latest release: 5 months ago - 22.5 thousand downloads total - 1 maintainer
Top 2.3% on bioconductor.org
12 versions - Latest release: 5 months ago - 13 dependent packages - 394 thousand downloads total - 2 maintainers
flowWorkspace 4.24.0
Infrastructure for representing and interacting with gated and ungated cytometry data sets.12 versions - Latest release: 5 months ago - 13 dependent packages - 394 thousand downloads total - 2 maintainers
scifer 1.14.0
Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences8 versions - Latest release: 5 months ago - 15.3 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
10 versions - Latest release: 5 months ago - 3 dependent packages - 423 thousand downloads total - 1 maintainer
cytolib 2.24.0
C++ infrastructure for representing and interacting with the gated cytometry data10 versions - Latest release: 5 months ago - 3 dependent packages - 423 thousand downloads total - 1 maintainer
flowCut 1.22.0
Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis7 versions - Latest release: 5 months ago - 25.8 thousand downloads total - 1 maintainer
Top 4.0% on bioconductor.org
9 versions - Latest release: 5 months ago - 3 dependent packages - 164 thousand downloads total - 34 stars on GitHub - 1 maintainer
CytoML 2.24.0
A GatingML Interface for Cross Platform Cytometry Data Sharing9 versions - Latest release: 5 months ago - 3 dependent packages - 164 thousand downloads total - 34 stars on GitHub - 1 maintainer
COMPASS 1.49.0
Combinatorial Polyfunctionality Analysis of Single Cells7 versions - Latest release: 5 months ago - 37.1 thousand downloads total - 6 stars on GitHub - 1 maintainer
optimalFlow 1.24.0
optimalFlow7 versions - Latest release: 5 months ago - 17.4 thousand downloads total - 1 maintainer
flowBin 1.48.0
Combining multitube flow cytometry data by binning7 versions - Latest release: 5 months ago - 33.9 thousand downloads total - 1 maintainer
flowBeads 1.50.0
flowBeads: Analysis of flow bead data7 versions - Latest release: 4 months ago - 35.7 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
9 versions - Latest release: 5 months ago - 8 dependent packages - 235 thousand downloads total - 1 maintainer
openCyto 2.24.0
Hierarchical Gating Pipeline for flow cytometry data9 versions - Latest release: 5 months ago - 8 dependent packages - 235 thousand downloads total - 1 maintainer
Top 7.3% on bioconductor.org
7 versions - Latest release: 5 months ago - 1 dependent package - 54.1 thousand downloads total - 1 maintainer
flowMerge 2.60.0
Cluster Merging for Flow Cytometry Data7 versions - Latest release: 5 months ago - 1 dependent package - 54.1 thousand downloads total - 1 maintainer
reconsi 1.24.0
Resampling Collapsed Null Distributions for Simultaneous Inference7 versions - Latest release: 4 months ago - 14.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
flowVS 1.44.0
Variance stabilization in flow cytometry (and microarrays)7 versions - Latest release: 4 months ago - 34.3 thousand downloads total - 1 maintainer
cytoKernel 1.18.0
Differential expression using kernel-based score test7 versions - Latest release: 5 months ago - 15.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
7 versions - Latest release: 5 months ago - 7 dependent packages - 257 thousand downloads total - 2 maintainers
flowClust 3.50.0
Clustering for Flow Cytometry7 versions - Latest release: 5 months ago - 7 dependent packages - 257 thousand downloads total - 2 maintainers
immunoClust 1.44.0
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry7 versions - Latest release: 5 months ago - 27.7 thousand downloads total - 1 maintainer
SuperCellCyto 1.2.0
SuperCell For Cytometry Data2 versions - Latest release: 4 months ago - 5.26 thousand downloads total - 13 stars on GitHub - 1 maintainer
CytoGLMM 1.20.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments8 versions - Latest release: 5 months ago - 1 dependent package - 14.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
flowPloidy 1.38.0
Analyze flow cytometer data to determine sample ploidy7 versions - Latest release: 5 months ago - 21.7 thousand downloads total - 5 stars on GitHub - 1 maintainer
treekoR 1.20.0
Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations7 versions - Latest release: 5 months ago - 14.4 thousand downloads total - 1 maintainer
oneSENSE 1.26.0 removed
One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)3 versions - Latest release: over 2 years ago - 7.09 thousand downloads total - 1 maintainer
flowMap 1.42.0 removed
Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-R...3 versions - Latest release: over 2 years ago - 18.4 thousand downloads total - 1 maintainer
MIMOSA 1.37.0 removed
Mixture Models for Single-Cell Assays1 version - Latest release: almost 3 years ago - 15.6 thousand downloads total - 1 maintainer
Related Keywords
Software
76
ImmunoOncology
52
CellBasedAssays
26
Visualization
24
SingleCell
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Clustering
23
Preprocessing
15
CellBiology
13
DataImport
12
StatisticalMethod
11
QualityControl
10
DataRepresentation
10
Proteomics
8
MultipleComparison
6
DifferentialExpression
6
GUI
5
Infrastructure
5
Regression
5
MassSpectrometry
4
Classification
4
DimensionReduction
4
FeatureExtraction
4
Transcription
4
GeneExpression
4
bioconductor
4
Transcriptomics
3
Sequencing
3
RNASeq
3
Normalization
3
rstats
3
WorkflowStep
3
cytometry
2
r
2
shiny
2
MultidimensionalScaling
2
bioinformatics
2
ExperimentalDesign
2
Cancer
2
Microarray
2
single-cell
2
GeneTarget
2
OneChannel
2
Survival
2
Metagenomics
2
unwanted-variation
1
BiomedicalInformatics
1
evolution
1
flow-cytometry
1
polyploidy
1
random-effects
1
r-package
1
proportions
1
data-science
1
tidyverse
1
GraphAndNetwork
1
ggplot2
1
plotting
1
HIV
1
StemCells
1
Gating
1
computational-biology
1
SystemsBiology
1
TimeCourse
1
SangerSeq
1
Microbiome
1
Genetics
1
Annotation
1
ExperimentHubSoftware
1
Bioinformatics
1
DensityGating
1
FlowCytData
1
StemCell
1
PeakDetection
1
Technology
1
flowcytometry
1
mds
1
visualisation
1
ShinyApps
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Coverage
1
Bayesian
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Spatial
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batch-correction
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bayesian
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composition
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cytof
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differential-proportion
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microbiome
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multilevel
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