bioconductor.org "FlowCytometry" keyword
infinityFlow 1.20.2
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions7 versions - Latest release: about 1 month ago - 11 thousand downloads total - 1 maintainer
flowMeans 1.70.0
Non-parametric Flow Cytometry Data Gating6 versions - Latest release: 3 months ago - 2 dependent packages - 59 thousand downloads total - 1 maintainer
Top 0.8% on bioconductor.org
9 versions - Latest release: about 2 months ago - 51 dependent packages - 4.95 million downloads total - 1 maintainer
flowCore 2.22.1
flowCore: Basic structures for flow cytometry data9 versions - Latest release: about 2 months ago - 51 dependent packages - 4.95 million downloads total - 1 maintainer
Top 2.2% on bioconductor.org
6 versions - Latest release: 3 months ago - 11 dependent packages - 369 thousand downloads total - 1 maintainer
flowViz 1.74.0
Visualization for flow cytometry6 versions - Latest release: 3 months ago - 11 dependent packages - 369 thousand downloads total - 1 maintainer
GateFinder 1.30.0
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry6 versions - Latest release: 3 months ago - 14.6 thousand downloads total - 1 maintainer
flowVS 1.42.0
Variance stabilization in flow cytometry (and microarrays)6 versions - Latest release: 3 months ago - 25.1 thousand downloads total - 1 maintainer
flowPlots 1.58.0
flowPlots: analysis plots and data class for gated flow cytometry data6 versions - Latest release: 4 months ago - 30.1 thousand downloads total - 1 maintainer
MetaCyto 1.32.0
MetaCyto: A package for meta-analysis of cytometry data6 versions - Latest release: 3 months ago - 17.1 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 39.2 thousand downloads total - 1 maintainer
flowClean 1.48.0
flowClean6 versions - Latest release: 3 months ago - 39.2 thousand downloads total - 1 maintainer
cytoKernel 1.16.0
Differential expression using kernel-based score test6 versions - Latest release: 3 months ago - 8.44 thousand downloads total - 0 stars on GitHub - 1 maintainer
optimalFlow 1.22.0
optimalFlow6 versions - Latest release: 3 months ago - 10 thousand downloads total - 1 maintainer
Top 3.4% on bioconductor.org
6 versions - Latest release: 3 months ago - 3 dependent packages - 196 thousand downloads total - 1 maintainer
FlowSOM 2.18.0
Using self-organizing maps for visualization and interpretation of cytometry data6 versions - Latest release: 3 months ago - 3 dependent packages - 196 thousand downloads total - 1 maintainer
quantiseqr 1.18.0
Quantification of the Tumor Immune contexture from RNA-seq data6 versions - Latest release: 3 months ago - 2 dependent packages - 35.9 thousand downloads total - 1 maintainer
treekoR 1.18.0
Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations6 versions - Latest release: 4 months ago - 9.8 thousand downloads total - 1 maintainer
flowCHIC 1.44.0
Analyze flow cytometric data using histogram information6 versions - Latest release: 3 months ago - 23.1 thousand downloads total - 1 maintainer
flowTime 1.34.0
Annotation and analysis of biological dynamical systems using flow cytometry6 versions - Latest release: 3 months ago - 17.2 thousand downloads total - 1 maintainer
Top 7.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 45.7 thousand downloads total - 1 maintainer
flowMerge 2.58.0
Cluster Merging for Flow Cytometry Data6 versions - Latest release: 3 months ago - 1 dependent package - 45.7 thousand downloads total - 1 maintainer
tidytof 1.3.0
Analyze High-dimensional Cytometry Data Using Tidy Data Principles3 versions - Latest release: 3 months ago - 2.84 thousand downloads total - 19 stars on GitHub - 1 maintainer
immunoClust 1.42.0
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry6 versions - Latest release: 3 months ago - 20.8 thousand downloads total - 1 maintainer
diffcyt 1.30.0
Differential discovery in high-dimensional cytometry via high-resolution clustering8 versions - Latest release: 3 months ago - 5 dependent packages - 52.1 thousand downloads total - 21 stars on GitHub - 1 maintainer
Top 7.6% on bioconductor.org
6 versions - Latest release: 3 months ago - 2 dependent packages - 42.3 thousand downloads total - 1 maintainer
SamSPECTRAL 1.64.0
Identifies cell population in flow cytometry data6 versions - Latest release: 3 months ago - 2 dependent packages - 42.3 thousand downloads total - 1 maintainer
PeacoQC 1.20.0
Peak-based selection of high quality cytometry data6 versions - Latest release: 4 months ago - 1 dependent package - 19.9 thousand downloads total - 14 stars on GitHub - 1 maintainer
MACSQuantifyR 1.24.0
Fast treatment of MACSQuantify FACS data6 versions - Latest release: 3 months ago - 9.58 thousand downloads total - 1 maintainer
CytoDx 1.30.0
Robust prediction of clinical outcomes using cytometry data without cell gating6 versions - Latest release: 3 months ago - 15.1 thousand downloads total - 1 maintainer
flowBin 1.46.0
Combining multitube flow cytometry data by binning6 versions - Latest release: 3 months ago - 24.5 thousand downloads total - 1 maintainer
spillR 1.6.0
Spillover Compensation in Mass Cytometry Data6 versions - Latest release: 3 months ago - 5.04 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
6 versions - Latest release: 3 months ago - 7 dependent packages - 236 thousand downloads total - 2 maintainers
flowClust 3.48.0
Clustering for Flow Cytometry6 versions - Latest release: 3 months ago - 7 dependent packages - 236 thousand downloads total - 2 maintainers
flowSpecs 1.24.0
Tools for processing of high-dimensional cytometry data6 versions - Latest release: 3 months ago - 12.4 thousand downloads total - 6 stars on GitHub - 1 maintainer
CytoPipeline 1.10.0
Automation and visualization of flow cytometry data analysis pipelines6 versions - Latest release: 3 months ago - 2 dependent packages - 7.71 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 2.9% on bioconductor.org
8 versions - Latest release: 3 months ago - 8 dependent packages - 214 thousand downloads total - 1 maintainer
openCyto 2.22.0
Hierarchical Gating Pipeline for flow cytometry data8 versions - Latest release: 3 months ago - 8 dependent packages - 214 thousand downloads total - 1 maintainer
Top 4.9% on bioconductor.org
11 versions - Latest release: 3 months ago - 5 dependent packages - 84.8 thousand downloads total - 70 stars on GitHub - 1 maintainer
CATALYST 1.34.1
Cytometry dATa anALYSis Tools11 versions - Latest release: 3 months ago - 5 dependent packages - 84.8 thousand downloads total - 70 stars on GitHub - 1 maintainer
MAPFX 1.6.3
MAssively Parallel Flow cytometry Xplorer (MAPFX): A Toolbox for Analysing Data from the Massivel...5 versions - Latest release: about 1 month ago - 4.98 thousand downloads total - 1 stars on GitHub - 1 maintainer
flowCut 1.20.0
Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis6 versions - Latest release: 3 months ago - 14.6 thousand downloads total - 1 maintainer
flowGate 1.10.0
Interactive Cytometry Gating in R6 versions - Latest release: 3 months ago - 7.68 thousand downloads total - 1 maintainer
Top 2.3% on bioconductor.org
11 versions - Latest release: about 1 month ago - 13 dependent packages - 361 thousand downloads total - 2 maintainers
flowWorkspace 4.22.1
Infrastructure for representing and interacting with gated and ungated cytometry data sets.11 versions - Latest release: about 1 month ago - 13 dependent packages - 361 thousand downloads total - 2 maintainers
CytoGLMM 1.18.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments7 versions - Latest release: 4 months ago - 1 dependent package - 9.81 thousand downloads total - 2 stars on GitHub - 1 maintainer
flowMatch 1.46.0
Matching and meta-clustering in flow cytometry6 versions - Latest release: 4 months ago - 25.6 thousand downloads total - 1 maintainer
CytoMDS 1.6.1
Low Dimensions projection of cytometry samples5 versions - Latest release: 2 months ago - 5.45 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 4.0% on bioconductor.org
8 versions - Latest release: 4 months ago - 3 dependent packages - 148 thousand downloads total - 31 stars on GitHub - 1 maintainer
CytoML 2.22.0
A GatingML Interface for Cross Platform Cytometry Data Sharing8 versions - Latest release: 4 months ago - 3 dependent packages - 148 thousand downloads total - 31 stars on GitHub - 1 maintainer
CyTOFpower 1.16.0
Power analysis for CyTOF experiments7 versions - Latest release: 4 months ago - 6.11 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 39 thousand downloads total - 1 maintainer
flowTrans 1.62.0
Parameter Optimization for Flow Cytometry Data Transformation6 versions - Latest release: 3 months ago - 39 thousand downloads total - 1 maintainer
COMPASS 1.48.0
Combinatorial Polyfunctionality Analysis of Single Cells6 versions - Latest release: 4 months ago - 29.1 thousand downloads total - 6 stars on GitHub - 1 maintainer
DepecheR 1.26.0
Determination of essential phenotypic elements of clusters in high-dimensional entities6 versions - Latest release: 4 months ago - 1 dependent package - 24.5 thousand downloads total - 1 maintainer
Top 2.3% on bioconductor.org
7 versions - Latest release: 3 months ago - 6 dependent packages - 296 thousand downloads total - 1 maintainer
ncdfFlow 2.56.0
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.7 versions - Latest release: 3 months ago - 6 dependent packages - 296 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 2 dependent packages - 40.3 thousand downloads total
flowPeaks 1.56.0
An R package for flow data clustering6 versions - Latest release: 3 months ago - 2 dependent packages - 40.3 thousand downloads total
plotGrouper 1.28.0
Shiny app GUI wrapper for ggplot with built-in statistical analysis6 versions - Latest release: 4 months ago - 11.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 7.7% on bioconductor.org
6 versions - Latest release: 4 months ago - 2 dependent packages - 46.6 thousand downloads total - 2 maintainers
flowFP 1.68.0
Fingerprinting for Flow Cytometry6 versions - Latest release: 4 months ago - 2 dependent packages - 46.6 thousand downloads total - 2 maintainers
Top 5.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 75.4 thousand downloads total - 1 maintainer
flowAI 1.40.0
Automatic and interactive quality control for flow cytometry data6 versions - Latest release: 3 months ago - 1 dependent package - 75.4 thousand downloads total - 1 maintainer
flowCyBar 1.46.0
Analyze flow cytometric data using gate information6 versions - Latest release: 3 months ago - 22.3 thousand downloads total - 1 maintainer
censcyt 1.18.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry6 versions - Latest release: 3 months ago - 8.96 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
9 versions - Latest release: 3 months ago - 3 dependent packages - 376 thousand downloads total - 1 maintainer
cytolib 2.22.0
C++ infrastructure for representing and interacting with the gated cytometry data9 versions - Latest release: 3 months ago - 3 dependent packages - 376 thousand downloads total - 1 maintainer
reconsi 1.22.0
Resampling Collapsed Null Distributions for Simultaneous Inference6 versions - Latest release: 4 months ago - 9.25 thousand downloads total - 2 stars on GitHub - 1 maintainer
scDataviz 1.20.0
scDataviz: single cell dataviz and downstream analyses6 versions - Latest release: 4 months ago - 11.3 thousand downloads total - 63 stars on GitHub - 1 maintainer
tidyFlowCore 1.4.0
tidyFlowCore: Bringing flowCore to the tidyverse3 versions - Latest release: 4 months ago - 3.78 thousand downloads total - 2 stars on GitHub - 1 maintainer
scifer 1.12.0
Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences7 versions - Latest release: 4 months ago - 7.27 thousand downloads total - 5 stars on GitHub - 1 maintainer
CytoPipelineGUI 1.8.0
GUI's for visualization of flow cytometry data analysis pipelines5 versions - Latest release: 4 months ago - 5.52 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 3.8% on bioconductor.org
9 versions - Latest release: about 1 month ago - 9 dependent packages - 190 thousand downloads total - 61 stars on GitHub - 1 maintainer
ggcyto 1.38.1
Visualize Cytometry data with ggplot9 versions - Latest release: about 1 month ago - 9 dependent packages - 190 thousand downloads total - 61 stars on GitHub - 1 maintainer
flowGraph 1.18.0
Identifying differential cell populations in flow cytometry data accounting for marker frequency6 versions - Latest release: 4 months ago - 8.92 thousand downloads total - 1 stars on GitHub - 1 maintainer
cyanoFilter 1.18.0
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity6 versions - Latest release: 3 months ago - 10.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 2.9% on bioconductor.org
7 versions - Latest release: 4 months ago - 9 dependent packages - 246 thousand downloads total - 14 stars on GitHub - 2 maintainers
flowStats 4.22.0
Statistical methods for the analysis of flow cytometry data7 versions - Latest release: 4 months ago - 9 dependent packages - 246 thousand downloads total - 14 stars on GitHub - 2 maintainers
flowBeads 1.48.0
flowBeads: Analysis of flow bead data6 versions - Latest release: 3 months ago - 26 thousand downloads total - 1 maintainer
flowPloidy 1.36.0
Analyze flow cytometer data to determine sample ploidy6 versions - Latest release: 4 months ago - 16.4 thousand downloads total - 5 stars on GitHub - 1 maintainer
cytoMEM 1.14.0
Marker Enrichment Modeling (MEM)6 versions - Latest release: 3 months ago - 8.91 thousand downloads total - 0 stars on GitHub - 1 maintainer
SuperCellCyto 1.0.0
SuperCell For Cytometry Data1 version - Latest release: 4 months ago - 910 downloads total - 13 stars on GitHub - 1 maintainer
sccomp 2.2.0
Differential Composition and Variability Analysis for Single-Cell Data6 versions - Latest release: 3 months ago - 10.3 thousand downloads total - 112 stars on GitHub - 1 maintainer
distinct 1.22.0
distinct: a method for differential analyses via hierarchical permutation tests7 versions - Latest release: 4 months ago - 2 dependent packages - 18.3 thousand downloads total - 11 stars on GitHub - 1 maintainer
cydar 1.34.0
Using Mass Cytometry for Differential Abundance Analyses7 versions - Latest release: 4 months ago - 21.7 thousand downloads total - 1 maintainer
Sconify 1.30.0
A toolkit for performing KNN-based statistics for flow and mass cytometry data7 versions - Latest release: 3 months ago - 13.7 thousand downloads total - 1 maintainer
Top 7.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 3 dependent packages - 54.8 thousand downloads total - 1 maintainer
flowDensity 1.44.0
Sequential Flow Cytometry Data Gating6 versions - Latest release: 3 months ago - 3 dependent packages - 54.8 thousand downloads total - 1 maintainer
brainflowprobes 1.20.0 removed
Plots and annotation for choosing BrainFlow target probe sequence4 versions - Latest release: over 1 year ago - 5.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
oneSENSE 1.26.0 removed
One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)3 versions - Latest release: almost 2 years ago - 7.09 thousand downloads total - 1 maintainer
flowMap 1.42.0 removed
Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-R...3 versions - Latest release: almost 2 years ago - 18.4 thousand downloads total - 1 maintainer
MIMOSA 1.37.0 removed
Mixture Models for Single-Cell Assays1 version - Latest release: over 2 years ago - 15.6 thousand downloads total - 1 maintainer
Related Keywords
Software
73
ImmunoOncology
51
CellBasedAssays
26
SingleCell
23
Clustering
23
Visualization
23
CellBiology
13
Preprocessing
13
DataImport
12
StatisticalMethod
11
DataRepresentation
10
QualityControl
8
Proteomics
8
DifferentialExpression
6
MultipleComparison
6
GUI
5
Infrastructure
5
Regression
5
GeneExpression
4
Classification
4
FeatureExtraction
4
Transcription
4
MassSpectrometry
4
Normalization
3
WorkflowStep
3
DimensionReduction
3
Transcriptomics
3
Sequencing
3
RNASeq
3
bioconductor
3
ExperimentalDesign
2
Survival
2
Metagenomics
2
GeneTarget
2
Cancer
2
single-cell
2
rstats
2
r
2
OneChannel
2
cytometry
2
bioinformatics
2
Microarray
2
microbiome
1
differential-proportion
1
cytof
1
composition
1
bayesian
1
batch-correction
1
Spatial
1
Bayesian
1
computational-biology
1
SystemsBiology
1
multilevel
1
proportions
1
r-package
1
random-effects
1
unwanted-variation
1
Genetics
1
Bioinformatics
1
DensityGating
1
FlowCytData
1
StemCell
1
Coverage
1
tidyverse
1
HIV
1
StemCells
1
PeakDetection
1
data-science
1
TimeCourse
1
MultidimensionalScaling
1
ExperimentHubSoftware
1
Gating
1
GraphAndNetwork
1
Annotation
1
Technology
1
ggplot2
1
plotting
1
shiny
1
BiomedicalInformatics
1
Microbiome
1
SangerSeq
1
ShinyApps
1
evolution
1
flow-cytometry
1
polyploidy
1