bioconductor.org "bioconductor-package" keyword
CopyNumberPlots 1.28.0
Create Copy-Number Plots using karyoploteR functionality8 versions - Latest release: 5 months ago - 2 dependent packages - 29.3 thousand downloads total - 7 stars on GitHub - 1 maintainer
shinybiocloader 1.2.0
Use a Shiny Bioconductor CSS loader2 versions - Latest release: 5 months ago - 6.1 thousand downloads total - 0 stars on GitHub - 1 maintainer
BridgeDbR 2.22.0
Code for using BridgeDb identifier mapping framework from within R7 versions - Latest release: 5 months ago - 39.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 4.4% on bioconductor.org
7 versions - Latest release: 5 months ago - 4 dependent packages - 110 thousand downloads total - 127 stars on GitHub - 1 maintainer
SC3 1.40.0
Single-Cell Consensus Clustering7 versions - Latest release: 5 months ago - 4 dependent packages - 110 thousand downloads total - 127 stars on GitHub - 1 maintainer
Top 9.3% on bioconductor.org
7 versions - Latest release: 5 months ago - 28 dependent packages - 1.63 million downloads total - 8 stars on GitHub - 1 maintainer
BiocSingular 1.28.0 💰
Singular Value Decomposition for Bioconductor Packages7 versions - Latest release: 5 months ago - 28 dependent packages - 1.63 million downloads total - 8 stars on GitHub - 1 maintainer
TENxIO 1.14.0
Import methods for 10X Genomics files12 versions - Latest release: 5 months ago - 1 dependent package - 19.9 thousand downloads total - 1 stars on GitHub - 1 maintainer
BiocBaseUtils 1.14.2
Utility and internal functions for Bioconductor packages8 versions - Latest release: 4 months ago - 11 dependent packages - 564 thousand downloads total - 4 stars on GitHub - 1 maintainer
VisiumIO 1.8.0
Import Visium data from the 10X Space Ranger pipeline7 versions - Latest release: 5 months ago - 13.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
GCPtools 1.2.1
Tools for working with gcloud and gsutil3 versions - Latest release: 4 months ago - 8.01 thousand downloads total - 0 stars on GitHub - 1 maintainer
Bioc.gff 1.2.0
Read and write GFF and GTF files2 versions - Latest release: 5 months ago - 4.43 thousand downloads total - 0 stars on GitHub - 1 maintainer
PureCN 2.18.0
Copy number calling and SNV classification using targeted short read sequencing11 versions - Latest release: 5 months ago - 56.4 thousand downloads total - 151 stars on GitHub - 1 maintainer
Top 1.1% on bioconductor.org
12 versions - Latest release: 5 months ago - 377 dependent packages - 9.68 million downloads total - 69 stars on GitHub - 1 maintainer
BiocParallel 1.46.0
Bioconductor facilities for parallel evaluation12 versions - Latest release: 5 months ago - 377 dependent packages - 9.68 million downloads total - 69 stars on GitHub - 1 maintainer
CNVRanger 1.28.0
Summarization and expression/phenotype association of CNV ranges9 versions - Latest release: 5 months ago - 21.4 thousand downloads total - 4 stars on GitHub - 1 maintainer
EpiCompare 1.16.0
Comparison, Benchmarking & QC of Epigenomic Datasets16 versions - Latest release: 5 months ago - 13.2 thousand downloads total - 19 stars on GitHub - 1 maintainer
ReducedExperiment 1.4.0
Containers and tools for dimensionally-reduced -omics representations4 versions - Latest release: 5 months ago - 7.65 thousand downloads total - 3 stars on GitHub - 1 maintainer
BindingSiteFinder 2.10.0
Binding site defintion based on iCLIP data7 versions - Latest release: 5 months ago - 15.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
BatchSVG 1.4.0
Identify Batch-Biased Spatially Variable Genes3 versions - Latest release: 5 months ago - 7.82 thousand downloads total - 5 stars on GitHub - 1 maintainer
MotifPeeker 1.4.0
Benchmarking Epigenomic Profiling Methods Using Motif Enrichment3 versions - Latest release: 5 months ago - 6.29 thousand downloads total - 3 stars on GitHub - 1 maintainer
raer 1.10.0
RNA editing tools in R7 versions - Latest release: 5 months ago - 17.2 thousand downloads total - 11 stars on GitHub - 1 maintainer
GSEABenchmarkeR 1.32.0
Reproducible GSEA Benchmarking8 versions - Latest release: 5 months ago - 2 dependent packages - 24.6 thousand downloads total - 14 stars on GitHub - 1 maintainer
GenomicSuperSignature 1.20.0
Interpretation of RNA-seq experiments through robust, efficient comparison to public databases8 versions - Latest release: 5 months ago - 16.6 thousand downloads total - 12 stars on GitHub - 1 maintainer
terraTCGAdata 1.16.0
OpenAccess TCGA Data on Terra as MultiAssayExperiment7 versions - Latest release: 5 months ago - 11.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
cBioPortalData 2.24.0
Exposes and Makes Available Data from the cBioPortal Web Resources11 versions - Latest release: 5 months ago - 4 dependent packages - 49.3 thousand downloads total - 37 stars on GitHub - 1 maintainer
DNAfusion 1.14.0
Identification of gene fusions using paired-end sequencing7 versions - Latest release: 5 months ago - 13.6 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
12 versions - Latest release: about 2 months ago - 6 dependent packages - 342 thousand downloads total - 10 stars on GitHub - 1 maintainer
BiocCheck 1.48.1
Bioconductor-specific package checks12 versions - Latest release: about 2 months ago - 6 dependent packages - 342 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 8.6% on bioconductor.org
7 versions - Latest release: 5 months ago - 19 dependent packages - 1.47 million downloads total - 5 stars on GitHub - 1 maintainer
AnnotationFilter 1.36.0
Facilities for Filtering Bioconductor Annotation Resources7 versions - Latest release: 5 months ago - 19 dependent packages - 1.47 million downloads total - 5 stars on GitHub - 1 maintainer
doppelgangR 1.40.0
Identify likely duplicate samples from genomic or meta-data8 versions - Latest release: about 2 months ago - 27.8 thousand downloads total - 5 stars on GitHub - 1 maintainer
pram 1.28.0
Pooling RNA-seq datasets for assembling transcript models7 versions - Latest release: 5 months ago - 18.3 thousand downloads total - 2 stars on GitHub - 1 maintainer
HDTD 1.46.0
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Trans...7 versions - Latest release: 5 months ago - 24.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
bugsigdbr 1.18.0
R-side access to published microbial signatures from BugSigDB17 versions - Latest release: 5 months ago - 25.2 thousand downloads total - 6 stars on GitHub - 1 maintainer
QUBIC 1.40.0
An R Package for Qualitative Biclustering in Support of Gene Co-Expression Analyses7 versions - Latest release: 3 months ago - 2 dependent packages - 39.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 1.3% on bioconductor.org
8 versions - Latest release: 5 months ago - 36 dependent packages - 2.08 million downloads total - 8 stars on GitHub - 1 maintainer
ShortRead 1.70.0
FASTQ input and manipulation8 versions - Latest release: 5 months ago - 36 dependent packages - 2.08 million downloads total - 8 stars on GitHub - 1 maintainer
UniProt.ws 2.52.1
R Interface to UniProt Web Services9 versions - Latest release: about 2 months ago - 6 dependent packages - 92.6 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 2.1% on bioconductor.org
10 versions - Latest release: 5 months ago - 62 dependent packages - 805 thousand downloads total - 48 stars on GitHub - 1 maintainer
scran 1.40.0
Methods for Single-Cell RNA-Seq Data Analysis10 versions - Latest release: 5 months ago - 62 dependent packages - 805 thousand downloads total - 48 stars on GitHub - 1 maintainer
GOexpress 1.46.0
Visualise microarray and RNAseq data using gene ontology annotations7 versions - Latest release: 5 months ago - 1 dependent package - 41.8 thousand downloads total - 10 stars on GitHub - 1 maintainer
HuBMAPR 1.6.2
Interface to 'HuBMAP'10 versions - Latest release: 3 months ago - 7.77 thousand downloads total - 3 stars on GitHub - 1 maintainer
structToolbox 1.24.0
Data processing & analysis tools for Metabolomics and other omics10 versions - Latest release: 4 months ago - 1 dependent package - 20.2 thousand downloads total - 11 stars on GitHub - 1 maintainer
similaRpeak 1.44.0
Metrics to estimate a level of similarity between two ChIP-Seq profiles7 versions - Latest release: 5 months ago - 1 dependent package - 29 thousand downloads total - 7 stars on GitHub - 1 maintainer
GeneTonic 3.6.0
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional ...7 versions - Latest release: 5 months ago - 1 dependent package - 28.8 thousand downloads total - 83 stars on GitHub - 1 maintainer
cellmigRation 1.20.0
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics7 versions - Latest release: 5 months ago - 13.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
crisprBwa 1.16.0
BWA-based alignment of CRISPR gRNA spacer sequences7 versions - Latest release: 5 months ago - 1 dependent package - 12.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
crisprViz 1.14.0
Visualization Functions for CRISPR gRNAs7 versions - Latest release: 4 months ago - 2 dependent packages - 16.5 thousand downloads total - 8 stars on GitHub - 1 maintainer
orthogene 1.18.1
Gene mapping made easy9 versions - Latest release: 5 months ago - 1 dependent package - 39.5 thousand downloads total - 58 stars on GitHub - 1 maintainer
BASiCS 2.24.0
Bayesian Analysis of Single-Cell Sequencing data7 versions - Latest release: 5 months ago - 2 dependent packages - 42.4 thousand downloads total - 88 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
8 versions - Latest release: 5 months ago - 12 dependent packages - 221 thousand downloads total - 3 stars on GitHub - 1 maintainer
GenomicFiles 1.48.0
Distributed computing by file or by range8 versions - Latest release: 5 months ago - 12 dependent packages - 221 thousand downloads total - 3 stars on GitHub - 1 maintainer
msPurity 1.38.0
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabol...8 versions - Latest release: 4 months ago - 25.8 thousand downloads total - 16 stars on GitHub - 1 maintainer
Top 3.8% on bioconductor.org
8 versions - Latest release: 5 months ago - 1,298 dependent packages - 1.16 million downloads total - 15 stars on GitHub - 1 maintainer
BiocStyle 2.40.0
Standard styles for vignettes and other Bioconductor documents8 versions - Latest release: 5 months ago - 1,298 dependent packages - 1.16 million downloads total - 15 stars on GitHub - 1 maintainer
BERT 1.8.0
High Performance Data Integration for Large-Scale Analyses of Incomplete Omic Profiles Using Batc...5 versions - Latest release: 5 months ago - 8.69 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 8.0% on bioconductor.org
8 versions - Latest release: 5 months ago - 15 dependent packages - 2.07 million downloads total - 6 stars on GitHub - 1 maintainer
beachmat 2.28.0
Compiling Bioconductor to Handle Each Matrix Type8 versions - Latest release: 5 months ago - 15 dependent packages - 2.07 million downloads total - 6 stars on GitHub - 1 maintainer
Top 9.9% on bioconductor.org
7 versions - Latest release: 5 months ago - 66 thousand downloads total - 101 stars on GitHub - 1 maintainer
scmap 1.34.0
A tool for unsupervised projection of single cell RNA-seq data7 versions - Latest release: 5 months ago - 66 thousand downloads total - 101 stars on GitHub - 1 maintainer
BEclear 2.28.0
Correction of batch effects in DNA methylation data7 versions - Latest release: 4 months ago - 34.3 thousand downloads total - 5 stars on GitHub - 1 maintainer
crisprDesign 1.14.0
Comprehensive design of CRISPR gRNAs for nucleases and base editors7 versions - Latest release: 5 months ago - 3 dependent packages - 24.8 thousand downloads total - 33 stars on GitHub - 1 maintainer
Top 6.6% on bioconductor.org
7 versions - Latest release: 5 months ago - 1 dependent package - 63.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
Organism.dplyr 1.40.0
dplyr-based Access to Bioconductor Annotation Resources7 versions - Latest release: 5 months ago - 1 dependent package - 63.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
crisprScore 1.16.0
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs7 versions - Latest release: 5 months ago - 3 dependent packages - 25.4 thousand downloads total - 31 stars on GitHub - 1 maintainer
TDbasedUFEadv 1.12.1
Advanced package of tensor decomposition based unsupervised feature extraction8 versions - Latest release: 5 months ago - 15.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
crisprBase 1.16.0
Base functions and classes for CRISPR gRNA design7 versions - Latest release: 5 months ago - 6 dependent packages - 23.7 thousand downloads total - 6 stars on GitHub - 1 maintainer
lefser 1.22.0
R implementation of the LEfSE method for microbiome biomarker discovery9 versions - Latest release: 5 months ago - 1 dependent package - 108 thousand downloads total - 68 stars on GitHub - 1 maintainer
deconvR 1.18.0
Simulation and Deconvolution of Omic Profiles8 versions - Latest release: 5 months ago - 21.6 thousand downloads total - 9 stars on GitHub - 1 maintainer
scmeth 1.32.0
Functions to conduct quality control analysis in methylation data7 versions - Latest release: 5 months ago - 1 dependent package - 25.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 7.3% on bioconductor.org
11 versions - Latest release: 3 months ago - 7 dependent packages - 202 thousand downloads total - 19 stars on GitHub - 1 maintainer
TCGAutils 1.32.2
TCGA utility functions for data management11 versions - Latest release: 3 months ago - 7 dependent packages - 202 thousand downloads total - 19 stars on GitHub - 1 maintainer
crisprBowtie 1.16.0
Bowtie-based alignment of CRISPR gRNA spacer sequences7 versions - Latest release: 5 months ago - 2 dependent packages - 18.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
iSEEhub 1.14.0
iSEE for the Bioconductor ExperimentHub7 versions - Latest release: 5 months ago - 15.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
Related Keywords
Software
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Infrastructure
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DataImport
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Sequencing
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GeneExpression
15
bioconductor
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RNASeq
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SingleCell
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DifferentialExpression
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Transcriptomics
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FunctionalGenomics
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ImmunoOncology
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r
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core-package
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u24ca289073
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Visualization
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Genetics
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QualityControl
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Annotation
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Microarray
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DataRepresentation
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CRISPR
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crispr
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MultipleComparison
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crispr-design
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grna
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grna-sequence
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Preprocessing
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grna-sequences
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bioinformatics
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sgrna-design
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human-cell-atlas
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sgrna
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StatisticalMethod
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Coverage
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Clustering
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crispr-target
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crispr-cas9
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Transcription
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genomics
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GeneSetEnrichment
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Alignment
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Pathways
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DimensionReduction
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Network
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crispr-analysis
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ThirdPartyClient
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GO
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ChIPSeq
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Metabolomics
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GUI
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BatchEffect
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DNAMethylation
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CopyNumberVariation
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Classification
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genetics
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GeneTarget
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FeatureExtraction
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methylation
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dna-methylation
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gene-expression
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SupportVectorMachine
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aligner
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WorkflowStep
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dims
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lc-ms
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metabolomics
2
genes
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statistics
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ShinyApps
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Microbiome
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Normalization
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chip-seq
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r01ca230551
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Epigenetics
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batch-effect
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BiologicalQuestion
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GenomeAnnotation
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ReportWriting
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CellBiology
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shiny
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u24hg010263
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single-cell
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