bioconductor.org "genomics" keyword
View the packages on the bioconductor.org package registry that are tagged with the "genomics" keyword.
Top 4.1% on bioconductor.org
8 versions - Latest release: about 1 month ago - 3 dependent packages - 197 thousand downloads total - 89 stars on GitHub - 1 maintainer
GenomicDataCommons 1.32.1
NIH / NCI Genomic Data Commons Access8 versions - Latest release: about 1 month ago - 3 dependent packages - 197 thousand downloads total - 89 stars on GitHub - 1 maintainer
BulkSignalR 1.0.2
Infer Ligand-Receptor Interactions from bulk expression (transcriptomics/proteomics) data, or spa...2 versions - Latest release: about 1 month ago - 1.67 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
5 versions - Latest release: 3 months ago - 9 dependent packages - 281 thousand downloads total - 469 stars on GitHub - 1 maintainer
maftools 2.24.0 💰
Summarize, Analyze and Visualize MAF Files5 versions - Latest release: 3 months ago - 9 dependent packages - 281 thousand downloads total - 469 stars on GitHub - 1 maintainer
ontoProc 2.2.1
processing of ontologies of anatomy, cell lines, and so on7 versions - Latest release: about 1 month ago - 3 dependent packages - 20.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
nullranges 1.14.0
Generation of null ranges via bootstrapping or covariate matching5 versions - Latest release: 2 months ago - 1 dependent package - 11 thousand downloads total - 22 stars on GitHub - 1 maintainer
Top 1.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 47 dependent packages - 2.09 million downloads total - 98 stars on GitHub - 1 maintainer
GEOquery 2.76.0
Get data from NCBI Gene Expression Omnibus (GEO)5 versions - Latest release: 3 months ago - 47 dependent packages - 2.09 million downloads total - 98 stars on GitHub - 1 maintainer
getDEE2 1.18.0
Programmatic access to the DEE2 RNA expression dataset6 versions - Latest release: 2 months ago - 7.91 thousand downloads total - 4 stars on GitHub - 1 maintainer
crisprScore 1.12.0
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs5 versions - Latest release: 3 months ago - 3 dependent packages - 10.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
UMI4Cats 1.18.1
UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data6 versions - Latest release: 2 months ago - 7.82 thousand downloads total - 5 stars on GitHub - 1 maintainer
epidecodeR 1.16.0
epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation5 versions - Latest release: 3 months ago - 6.74 thousand downloads total - 3 stars on GitHub - 1 maintainer
proActiv 1.18.0
Estimate Promoter Activity from RNA-Seq data5 versions - Latest release: 2 months ago - 8.72 thousand downloads total - 53 stars on GitHub - 1 maintainer
gemma.R 3.4.5
A wrapper for Gemma's Restful API to access curated gene expression data and differential express...16 versions - Latest release: 7 days ago - 6.41 thousand downloads total - 10 stars on GitHub - 1 maintainer
switchde 1.34.0
Switch-like differential expression across single-cell trajectories5 versions - Latest release: 2 months ago - 14.6 thousand downloads total - 20 stars on GitHub - 1 maintainer
fishpond 2.14.0
Fishpond: downstream methods and tools for expression data5 versions - Latest release: 2 months ago - 1 dependent package - 36.4 thousand downloads total - 29 stars on GitHub - 1 maintainer
CopyNumberPlots 1.24.0
Create Copy-Number Plots using karyoploteR functionality6 versions - Latest release: about 2 months ago - 2 dependent packages - 13.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
VisiumIO 1.4.3
Import Visium data from the 10X Space Ranger pipeline5 versions - Latest release: 3 months ago - 3.92 thousand downloads total - 0 stars on GitHub - 1 maintainer
MungeSumstats 1.16.0
Standardise summary statistics from GWAS7 versions - Latest release: 2 months ago - 41.6 thousand downloads total - 83 stars on GitHub - 1 maintainer
RAIDS 1.6.1
Robust Ancestry Inference using Data Synthesis4 versions - Latest release: 3 months ago - 4.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
orthogene 1.14.0
Interspecies gene mapping5 versions - Latest release: 3 months ago - 1 dependent package - 19.7 thousand downloads total - 43 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
8 versions - Latest release: 2 months ago - 18 dependent packages - 258 thousand downloads total - 18 stars on GitHub - 1 maintainer
gdsfmt 1.44.0
R Interface to CoreArray Genomic Data Structure (GDS) Files8 versions - Latest release: 2 months ago - 18 dependent packages - 258 thousand downloads total - 18 stars on GitHub - 1 maintainer
Top 2.2% on bioconductor.org
14 versions - Latest release: 3 months ago - 15 dependent packages - 554 thousand downloads total - 217 stars on GitHub - 1 maintainer
GSVA 2.2.0
Gene Set Variation Analysis for Microarray and RNA-Seq Data14 versions - Latest release: 3 months ago - 15 dependent packages - 554 thousand downloads total - 217 stars on GitHub - 1 maintainer
tidyomics 1.4.0
Easily install and load the tidyomics ecosystem4 versions - Latest release: 3 months ago - 3.72 thousand downloads total - 67 stars on GitHub - 1 maintainer
martini 1.28.0
GWAS Incorporating Networks5 versions - Latest release: 3 months ago - 11.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
netSmooth 1.28.0
Network smoothing for scRNAseq5 versions - Latest release: 3 months ago - 1 dependent package - 12.9 thousand downloads total - 27 stars on GitHub - 1 maintainer
ODER 1.6.0 removed
Optimising the Definition of Expressed Regions1 version - Latest release: almost 2 years ago - 1.01 thousand downloads total - 3 stars on GitHub - 1 maintainer
InterMineR 1.26.0 removed
R Interface with InterMine-Powered Databases4 versions - Latest release: about 1 year ago - 12 thousand downloads total - 17 stars on GitHub - 1 maintainer
Related Keywords
Software
26
bioinformatics
12
GeneExpression
11
Sequencing
10
r
10
Transcriptomics
9
RNASeq
9
FunctionalGenomics
7
DataImport
7
bioconductor
7
Visualization
6
Preprocessing
6
DifferentialExpression
6
SingleCell
5
bioconductor-package
5
transcriptomics
5
Normalization
5
r-package
5
Infrastructure
4
Genetics
4
GeneRegulation
4
Transcription
4
Microarray
4
GenomeWideAssociation
4
ComparativeGenomics
3
SNP
3
Epigenetics
3
GeneSetEnrichment
3
AlternativeSplicing
3
Network
3
rna-seq
3
GenomeAnnotation
3
FunctionalPrediction
3
statistics
2
rstats
2
OneChannel
2
GeneticVariability
2
DimensionReduction
2
gwas
2
Coverage
2
QualityControl
2
WholeGenome
2
SystemsBiology
2
genomics-visualization
2
DifferentialSplicing
2
BatchEffect
2
MultipleComparison
2
single-cell
2
gene-expression
2
Regression
2
Clustering
2
FeatureExtraction
2
cancer-genomics
2
DNASeq
2
GraphAndNetwork
2
Pathways
2
GO
2
Spatial
2
Proteomics
2
Annotation
2
HistoneModification
2
tcga
2
data-science
2
intermine
1
database-api
1
biology
1
cytometry
1
GenomicVariation
1
tidyverse
1
Reactome
1
network-analysis
1
KEGG
1
rnaseq
1
snps
1
u24ca289073
1
salmon
1
systems-biology
1
annotation
1
scrnaseq
1
copy-number-variation
1
CopyNumberVariation
1
biomedicine
1
comparative-genomics
1
evolutionary-biology
1
animal-models
1
Phylogenetics
1
whole-genome-sequencing
1
genes
1
ontologies
1
rna-sequencing
1
r-language
1
translational-research
1
inference
1
gds-format
1
infrastructure
1
exome-sequencing
1
ancestry
1
PrincipalComponent
1
BiocViews
1
vcf-files
1