bioconductor.org "genomics" keyword
Top 1.4% on bioconductor.org
7 versions - Latest release: 6 months ago - 47 dependent packages - 2.64 million downloads total - 118 stars on GitHub - 1 maintainer
GEOquery 2.80.0
Get data from NCBI Gene Expression Omnibus (GEO)7 versions - Latest release: 6 months ago - 47 dependent packages - 2.64 million downloads total - 118 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
7 versions - Latest release: 6 months ago - 22 dependent packages - 178 thousand downloads total - 156 stars on GitHub - 1 maintainer
plyranges 1.32.0
A fluent interface for manipulating GenomicRanges7 versions - Latest release: 6 months ago - 22 dependent packages - 178 thousand downloads total - 156 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
7 versions - Latest release: 6 months ago - 9 dependent packages - 381 thousand downloads total - 505 stars on GitHub - 1 maintainer
maftools 2.28.0 💰
Summarize, Analyze and Visualize MAF Files7 versions - Latest release: 6 months ago - 9 dependent packages - 381 thousand downloads total - 505 stars on GitHub - 1 maintainer
RAIDS 1.10.0
Robust Ancestry Inference using Data Synthesis6 versions - Latest release: 6 months ago - 15.6 thousand downloads total - 7 stars on GitHub - 1 maintainer
martini 1.32.0
GWAS Incorporating Networks7 versions - Latest release: 6 months ago - 25.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
crisprScore 1.16.0
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs7 versions - Latest release: 5 months ago - 3 dependent packages - 26.7 thousand downloads total - 31 stars on GitHub - 1 maintainer
gemma.R 3.8.1
A wrapper for Gemma's Restful API to access curated gene expression data and differential express...20 versions - Latest release: 12 days ago - 19.7 thousand downloads total - 10 stars on GitHub - 1 maintainer
switchde 1.38.0
Switch-like differential expression across single-cell trajectories7 versions - Latest release: 5 months ago - 29.3 thousand downloads total - 22 stars on GitHub - 1 maintainer
CopyNumberPlots 1.28.0
Create Copy-Number Plots using karyoploteR functionality8 versions - Latest release: 5 months ago - 2 dependent packages - 29.3 thousand downloads total - 7 stars on GitHub - 1 maintainer
fishpond 2.18.0
Fishpond: downstream methods and tools for expression data7 versions - Latest release: 6 months ago - 1 dependent package - 79 thousand downloads total - 33 stars on GitHub - 1 maintainer
VisiumIO 1.8.0
Import Visium data from the 10X Space Ranger pipeline7 versions - Latest release: 5 months ago - 13.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
scLANE 1.2.0
Model Gene Expression Dynamics with Spline-Based NB GLMs, GEEs, & GLMMs4 versions - Latest release: 6 months ago - 5.49 thousand downloads total - 17 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
12 versions - Latest release: 4 months ago - 18 dependent packages - 374 thousand downloads total - 20 stars on GitHub - 1 maintainer
gdsfmt 1.48.2
R Interface to CoreArray Genomic Data Structure (GDS) Files12 versions - Latest release: 4 months ago - 18 dependent packages - 374 thousand downloads total - 20 stars on GitHub - 1 maintainer
epidecodeR 1.20.0
epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation7 versions - Latest release: 6 months ago - 14.3 thousand downloads total - 5 stars on GitHub - 1 maintainer
proActiv 1.22.0
Estimate Promoter Activity from RNA-Seq data7 versions - Latest release: 5 months ago - 19 thousand downloads total - 59 stars on GitHub - 1 maintainer
UMI4Cats 1.22.0
UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data9 versions - Latest release: 5 months ago - 17.3 thousand downloads total - 6 stars on GitHub - 1 maintainer
netSmooth 1.32.0
Network smoothing for scRNAseq7 versions - Latest release: 6 months ago - 1 dependent package - 22.6 thousand downloads total - 30 stars on GitHub - 1 maintainer
Top 4.1% on bioconductor.org
11 versions - Latest release: 5 months ago - 3 dependent packages - 243 thousand downloads total - 90 stars on GitHub - 1 maintainer
GenomicDataCommons 1.36.0
NIH / NCI Genomic Data Commons Access11 versions - Latest release: 5 months ago - 3 dependent packages - 243 thousand downloads total - 90 stars on GitHub - 1 maintainer
nullranges 1.18.0
Generation of null ranges via bootstrapping or covariate matching8 versions - Latest release: 6 months ago - 1 dependent package - 22.9 thousand downloads total - 29 stars on GitHub - 1 maintainer
Top 2.2% on bioconductor.org
22 versions - Latest release: 3 months ago - 15 dependent packages - 899 thousand downloads total - 247 stars on GitHub - 1 maintainer
GSVA 2.6.6
Gene Set Variation Analysis for Microarray and RNA-Seq Data22 versions - Latest release: 3 months ago - 15 dependent packages - 899 thousand downloads total - 247 stars on GitHub - 1 maintainer
ontoProc 2.6.0
processing of ontologies of anatomy, cell lines, and so on9 versions - Latest release: 6 months ago - 3 dependent packages - 32.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
tidySummarizedExperiment 1.22.0
Brings SummarizedExperiment to the Tidyverse8 versions - Latest release: 5 months ago - 5 dependent packages - 30.1 thousand downloads total - 31 stars on GitHub - 1 maintainer
orthogene 1.18.1
Gene mapping made easy9 versions - Latest release: 6 months ago - 1 dependent package - 39.5 thousand downloads total - 58 stars on GitHub - 1 maintainer
BioGA 1.6.0
Bioinformatics Genetic Algorithm (BioGA)4 versions - Latest release: 4 months ago - 10.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
tidyomics 1.8.0
Easily install and load the tidyomics ecosystem6 versions - Latest release: 6 months ago - 12 thousand downloads total - 73 stars on GitHub - 1 maintainer
ODER 1.6.0 removed
Optimising the Definition of Expressed Regions1 version - Latest release: about 3 years ago - 1.01 thousand downloads total - 4 stars on GitHub - 1 maintainer
getDEE2 1.22.0
Programmatic access to the DEE2 RNA expression dataset8 versions - Latest release: 5 months ago - 14.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
InterMineR 1.26.0 removed
R Interface with InterMine-Powered Databases4 versions - Latest release: over 2 years ago - 12 thousand downloads total - 17 stars on GitHub - 1 maintainer
Related Keywords
Software
28
GeneExpression
13
Sequencing
12
bioinformatics
11
Transcriptomics
10
RNASeq
10
bioconductor
9
r
9
DifferentialExpression
8
transcriptomics
7
DataImport
7
Visualization
7
FunctionalGenomics
7
Normalization
6
SingleCell
6
Infrastructure
6
Preprocessing
5
Transcription
5
r-package
4
bioconductor-package
4
Clustering
4
Microarray
4
GeneRegulation
4
GeneSetEnrichment
4
GenomeWideAssociation
3
GenomeAnnotation
3
Epigenetics
3
Regression
3
single-cell
3
gene-expression
3
QualityControl
3
Genetics
3
rna-seq
3
Coverage
3
FunctionalPrediction
3
AlternativeSplicing
3
DNASeq
2
differential-expression
2
Annotation
2
HistoneModification
2
tidyverse
2
statistics
2
rnaseq
2
AssayDomain
2
data-science
2
tcga
2
data-analysis
2
BatchEffect
2
ExperimentalDesign
2
u24ca289073
2
FeatureExtraction
2
GeneticVariability
2
DataRepresentation
2
GraphAndNetwork
2
Network
2
DimensionReduction
2
cancer-genomics
2
GO
2
MultipleComparison
2
Pathways
2
SNP
2
SystemsBiology
2
DifferentialSplicing
2
ComparativeGenomics
2
rstats
2
genomics-visualization
2
OneChannel
2
ontologies
1
exome-sequencing
1
genes
1
crispr-design
1
ncbi-geo
1
evolutionary-biology
1
comparative-genomics
1
biomedicine
1
crispr-target
1
inference
1
rna-sequencing
1
grna
1
grna-sequence
1
r-language
1
animal-models
1
Phylogenetics
1
pathway-enrichment-analysis
1
gene-set-enrichment
1
sgrna
1
annotation
1
grna-sequences
1
rna-expression
1
data-mining
1
maf-files
1
sgrna-design
1
BiocViews
1
SAGE
1
cytometry
1
TwoChannel
1
optimization-algorithms
1
whole-genome-sequencing
1
genetic-algorithms
1
Technology
1