Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "genomics" keyword
gemma.R 3.0.3
A wrapper for Gemma's Restful API to access curated gene expression data and differential express...6 versions - Latest release: 6 days ago - 2.01 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
3 versions - Latest release: 20 days ago - 9 dependent packages - 226 thousand downloads total - 421 stars on GitHub - 1 maintainer
maftools 2.20.0 💰
Summarize, Analyze and Visualize MAF Files3 versions - Latest release: 20 days ago - 9 dependent packages - 226 thousand downloads total - 421 stars on GitHub - 1 maintainer
epidecodeR 1.10.0
epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation3 versions - Latest release: 6 months ago - 2.79 thousand downloads total - 3 stars on GitHub - 1 maintainer
nullranges 1.8.0
Generation of null ranges via bootstrapping or covariate matching3 versions - Latest release: 6 months ago - 1 dependent package - 4.44 thousand downloads total - 22 stars on GitHub - 1 maintainer
proActiv 1.12.0
Estimate Promoter Activity from RNA-Seq data3 versions - Latest release: 6 months ago - 4.46 thousand downloads total - 44 stars on GitHub - 1 maintainer
crisprScore 1.6.0
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs3 versions - Latest release: 6 months ago - 3 dependent packages - 5 thousand downloads total - 9 stars on GitHub - 1 maintainer
CopyNumberPlots 1.18.0
Create Copy-Number Plots using karyoploteR functionality3 versions - Latest release: 6 months ago - 2 dependent packages - 9.48 thousand downloads total - 6 stars on GitHub - 1 maintainer
netSmooth 1.24.0
Network smoothing for scRNAseq3 versions - Latest release: 7 days ago - 1 dependent package - 8.4 thousand downloads total - 26 stars on GitHub - 1 maintainer
Top 1.4% on bioconductor.org
3 versions - Latest release: 19 days ago - 47 dependent packages - 1.87 million downloads total - 82 stars on GitHub - 1 maintainer
GEOquery 2.72.0
Get data from NCBI Gene Expression Omnibus (GEO)3 versions - Latest release: 19 days ago - 47 dependent packages - 1.87 million downloads total - 82 stars on GitHub - 1 maintainer
Top 4.1% on bioconductor.org
3 versions - Latest release: 21 days ago - 3 dependent packages - 92.3 thousand downloads total - 82 stars on GitHub - 1 maintainer
GenomicDataCommons 1.28.0
NIH / NCI Genomic Data Commons Access3 versions - Latest release: 21 days ago - 3 dependent packages - 92.3 thousand downloads total - 82 stars on GitHub - 1 maintainer
InterMineR 1.26.0
R Interface with InterMine-Powered Databases4 versions - Latest release: 12 days ago - 10.4 thousand downloads total - 17 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
3 versions - Latest release: 12 days ago - 18 dependent packages - 211 thousand downloads total - 18 stars on GitHub - 1 maintainer
gdsfmt 1.40.0
R Interface to CoreArray Genomic Data Structure (GDS) Files3 versions - Latest release: 12 days ago - 18 dependent packages - 211 thousand downloads total - 18 stars on GitHub - 1 maintainer
fishpond 2.10.0
Fishpond: downstream methods and tools for expression data3 versions - Latest release: 13 days ago - 1 dependent package - 27.1 thousand downloads total - 21 stars on GitHub - 1 maintainer
martini 1.24.0
GWAS Incorporating Networks3 versions - Latest release: 13 days ago - 7.58 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 2.2% on bioconductor.org
7 versions - Latest release: 14 days ago - 15 dependent packages - 382 thousand downloads total - 164 stars on GitHub - 1 maintainer
GSVA 1.52.1
Gene Set Variation Analysis for Microarray and RNA-Seq Data7 versions - Latest release: 14 days ago - 15 dependent packages - 382 thousand downloads total - 164 stars on GitHub - 1 maintainer
MungeSumstats 1.12.0
Standardise summary statistics from GWAS4 versions - Latest release: 20 days ago - 23 thousand downloads total - 64 stars on GitHub - 1 maintainer
getDEE2 1.12.0
Programmatic access to the DEE2 RNA expression dataset2 versions - Latest release: 6 months ago - 3.69 thousand downloads total - 4 stars on GitHub - 1 maintainer
RAIDS 1.0.0
Accurate Inference of Genetic Ancestry from Cancer Sequences1 version - Latest release: 7 months ago - 708 downloads total - 5 stars on GitHub - 1 maintainer
ontoProc 1.24.0
processing of ontologies of anatomy, cell lines, and so on2 versions - Latest release: 7 months ago - 3 dependent packages - 13.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
orthogene 1.8.0
Interspecies gene mapping2 versions - Latest release: 7 months ago - 1 dependent package - 9.63 thousand downloads total - 33 stars on GitHub - 1 maintainer
switchde 1.28.0
Switch-like differential expression across single-cell trajectories2 versions - Latest release: 6 months ago - 10.2 thousand downloads total - 19 stars on GitHub - 1 maintainer
UMI4Cats 1.12.0
UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data2 versions - Latest release: 6 months ago - 3.55 thousand downloads total - 4 stars on GitHub - 1 maintainer
ODER 1.6.0 removed
Optimising the Definition of Expressed Regions1 version - Latest release: 7 months ago - 1.01 thousand downloads total - 3 stars on GitHub - 1 maintainer
Related Keywords
Software
23
bioinformatics
12
GeneExpression
10
r
9
Sequencing
9
FunctionalGenomics
7
Transcriptomics
7
bioconductor
7
RNASeq
7
Visualization
6
DataImport
6
Preprocessing
6
DifferentialExpression
5
r-package
5
Normalization
4
Microarray
4
Genetics
4
transcriptomics
4
bioconductor-package
4
SingleCell
4
GeneRegulation
4
GenomeWideAssociation
4
GenomeAnnotation
3
Epigenetics
3
FunctionalPrediction
3
GeneSetEnrichment
3
Transcription
3
AlternativeSplicing
3
rna-seq
3
ComparativeGenomics
3
SNP
3
WholeGenome
2
gwas
2
GeneticVariability
2
gene-expression
2
statistics
2
Regression
2
DifferentialSplicing
2
Infrastructure
2
Pathways
2
Coverage
2
OneChannel
2
MultipleComparison
2
GO
2
data-science
2
rstats
2
DimensionReduction
2
single-cell
2
GraphAndNetwork
2
Network
2
DNASeq
2
HistoneModification
2
SystemsBiology
2
FeatureExtraction
2
genomics-visualization
2
Annotation
2
tcga
2
cancer-genomics
2
BatchEffect
2
systems-biology
1
gene-set-enrichment
1
pathway-enrichment-analysis
1
GenomicVariation
1
database-api
1
qtl
1
standardisation
1
summary-statistics
1
snps
1
network-analysis
1
Bayesian
1
ExperimentalDesign
1
ThirdPartyClient
1
scrnaseq
1
salmon
1
rnaseq
1
gemma
1
Classification
1
infrastructure
1
gds-format
1
sgrna-design
1
annotation
1
umi4c
1
chromatin-interaction
1
chromatin
1
QualityControl
1
Alignment
1
ImmunoOncology
1
translational-research
1
ontologies
1
genes
1
evolutionary-biology
1
comparative-genomics
1
biomedicine
1
animal-models
1
Phylogenetics
1
ontology
1
whole-genome-sequencing
1
rna-sequencing
1
r-language
1
inference
1