bioconductor.org "CellBasedAssays" keyword
View the packages on the bioconductor.org package registry that are tagged with the "CellBasedAssays" keyword.
diffcyt 1.28.0
Differential discovery in high-dimensional cytometry via high-resolution clustering7 versions - Latest release: 3 months ago - 5 dependent packages - 39.2 thousand downloads total - 20 stars on GitHub - 1 maintainer
Top 0.8% on bioconductor.org
7 versions - Latest release: 3 months ago - 51 dependent packages - 4.84 million downloads total - 1 maintainer
flowCore 2.20.0
flowCore: Basic structures for flow cytometry data7 versions - Latest release: 3 months ago - 51 dependent packages - 4.84 million downloads total - 1 maintainer
eiR 1.48.0
Accelerated similarity searching of small molecules5 versions - Latest release: 3 months ago - 20.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
5 versions - Latest release: 2 months ago - 4 dependent packages - 152 thousand downloads total - 86 stars on GitHub - 1 maintainer
destiny 3.22.0
Creates diffusion maps5 versions - Latest release: 2 months ago - 4 dependent packages - 152 thousand downloads total - 86 stars on GitHub - 1 maintainer
CDI 1.6.0
Clustering Deviation Index (CDI)5 versions - Latest release: 3 months ago - 4.15 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 3.4% on bioconductor.org
5 versions - Latest release: 2 months ago - 3 dependent packages - 154 thousand downloads total - 1 maintainer
FlowSOM 2.16.0
Using self-organizing maps for visualization and interpretation of cytometry data5 versions - Latest release: 2 months ago - 3 dependent packages - 154 thousand downloads total - 1 maintainer
censcyt 1.16.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry5 versions - Latest release: 2 months ago - 6.91 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 6.3% on bioconductor.org
5 versions - Latest release: 2 months ago - 8 dependent packages - 503 thousand downloads total - 16 stars on GitHub - 1 maintainer
ChemmineR 3.60.0
Cheminformatics Toolkit for R5 versions - Latest release: 2 months ago - 8 dependent packages - 503 thousand downloads total - 16 stars on GitHub - 1 maintainer
immunoClust 1.40.0
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry5 versions - Latest release: 2 months ago - 18.2 thousand downloads total - 1 maintainer
flowGraph 1.16.0
Identifying differential cell populations in flow cytometry data accounting for marker frequency5 versions - Latest release: 3 months ago - 7.12 thousand downloads total - 0 stars on GitHub - 1 maintainer
bioassayR 1.46.0
Cross-target analysis of small molecule bioactivity5 versions - Latest release: 2 months ago - 30.7 thousand downloads total - 5 stars on GitHub - 1 maintainer
MAPFX 1.4.0
MAssively Parallel Flow cytometry Xplorer (MAPFX): A Toolbox for Analysing Data from the Massivel...3 versions - Latest release: 2 months ago - 3.17 thousand downloads total - 1 stars on GitHub - 1 maintainer
islify 1.0.0
Automatic scoring and classification of cell-based assay images1 version - Latest release: 3 months ago - 920 downloads total - 1 maintainer
iSEEfier 1.4.0
Streamlining the creation of initial states for starting an iSEE instance3 versions - Latest release: 2 months ago - 3.29 thousand downloads total - 0 stars on GitHub - 1 maintainer
UCell 2.12.0
Rank-based signature enrichment analysis for single-cell data7 versions - Latest release: 3 months ago - 1 dependent package - 66.2 thousand downloads total - 153 stars on GitHub - 1 maintainer
flowBin 1.44.0
Combining multitube flow cytometry data by binning5 versions - Latest release: 2 months ago - 21.6 thousand downloads total - 1 maintainer
scFeatures 1.8.0
scFeatures: Multi-view representations of single-cell and spatial data for disease outcome predic...6 versions - Latest release: 3 months ago - 4.98 thousand downloads total - 12 stars on GitHub - 1 maintainer
treeclimbR 1.4.0
An algorithm to find optimal signal levels in a tree4 versions - Latest release: 3 months ago - 3.37 thousand downloads total - 20 stars on GitHub - 1 maintainer
infinityFlow 1.18.0
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions5 versions - Latest release: 3 months ago - 8.65 thousand downloads total - 1 maintainer
cicero 1.26.0
Predict cis-co-accessibility from single-cell chromatin accessibility data5 versions - Latest release: 3 months ago - 30.2 thousand downloads total - 1 maintainer
CytoGLMM 1.16.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments5 versions - Latest release: 3 months ago - 1 dependent package - 7.55 thousand downloads total - 2 stars on GitHub - 1 maintainer
flowBeads 1.46.0
flowBeads: Analysis of flow bead data5 versions - Latest release: 3 months ago - 23.1 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 231 thousand downloads total - 11 stars on GitHub - 1 maintainer
ChemmineOB 1.46.0
R interface to a subset of OpenBabel functionalities5 versions - Latest release: 3 months ago - 2 dependent packages - 231 thousand downloads total - 11 stars on GitHub - 1 maintainer
flowSpecs 1.22.0
Tools for processing of high-dimensional cytometry data5 versions - Latest release: 3 months ago - 9.73 thousand downloads total - 6 stars on GitHub - 1 maintainer
CNORode 1.50.0
ODE add-on to CellNOptR5 versions - Latest release: 3 months ago - 1 dependent package - 31.4 thousand downloads total - 1 maintainer
Top 5.5% on bioconductor.org
5 versions - Latest release: 2 months ago - 8 dependent packages - 46.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
iSEE 2.20.0
Interactive SummarizedExperiment Explorer5 versions - Latest release: 2 months ago - 8 dependent packages - 46.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
SpatialOmicsOverlay 1.8.0
Spatial Overlay for Omic Data from Nanostring GeoMx Data5 versions - Latest release: 3 months ago - 4.87 thousand downloads total - 1 maintainer
CytoDx 1.28.0
Robust prediction of clinical outcomes using cytometry data without cell gating5 versions - Latest release: 3 months ago - 12.5 thousand downloads total - 1 maintainer
GeomxTools 3.11.0
NanoString GeoMx Tools6 versions - Latest release: 3 months ago - 3 dependent packages - 26 thousand downloads total - 1 maintainer
spicyR 1.20.2
Spatial analysis of in situ cytometry data11 versions - Latest release: 22 days ago - 2 dependent packages - 14.1 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 3.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 9 dependent packages - 139 thousand downloads total - 59 stars on GitHub - 1 maintainer
ggcyto 1.36.0
Visualize Cytometry data with ggplot6 versions - Latest release: 3 months ago - 9 dependent packages - 139 thousand downloads total - 59 stars on GitHub - 1 maintainer
flowPlots 1.56.0
flowPlots: analysis plots and data class for gated flow cytometry data5 versions - Latest release: 3 months ago - 27.5 thousand downloads total - 1 maintainer
MICSQTL 1.6.0
MICSQTL (Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci)4 versions - Latest release: 3 months ago - 3.94 thousand downloads total - 1 maintainer
flowCHIC 1.42.0
Analyze flow cytometric data using histogram information5 versions - Latest release: 3 months ago - 20.1 thousand downloads total - 1 maintainer
gespeR 1.40.0
Gene-Specific Phenotype EstimatoR5 versions - Latest release: 3 months ago - 18.9 thousand downloads total - 1 maintainer
staRank 1.50.0
Stability Ranking5 versions - Latest release: 3 months ago - 21.7 thousand downloads total - 1 maintainer
rcellminer 2.30.0
rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines5 versions - Latest release: 3 months ago - 20.4 thousand downloads total - 3 maintainers
GRmetrics 1.34.0
Calculate growth-rate inhibition (GR) metrics5 versions - Latest release: 3 months ago - 20.1 thousand downloads total - 1 stars on GitHub - 2 maintainers
sights 1.34.0
Statistics and dIagnostic Graphs for HTS5 versions - Latest release: 3 months ago - 13.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
flowTime 1.32.0
Annotation and analysis of biological dynamical systems using flow cytometry5 versions - Latest release: 3 months ago - 13.9 thousand downloads total - 1 maintainer
Top 9.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 31 thousand downloads total - 1 maintainer
RTCA 1.60.0
Open-source toolkit to analyse data from xCELLigence System (RTCA)5 versions - Latest release: 3 months ago - 31 thousand downloads total - 1 maintainer
netprioR 1.34.0
A model for network-based prioritisation of genes5 versions - Latest release: 3 months ago - 12.5 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 9 dependent packages - 196 thousand downloads total - 14 stars on GitHub - 2 maintainers
flowStats 4.20.0
Statistical methods for the analysis of flow cytometry data6 versions - Latest release: 3 months ago - 9 dependent packages - 196 thousand downloads total - 14 stars on GitHub - 2 maintainers
FuseSOM 1.10.0
A Correlation Based Multiview Self Organizing Maps Clustering For IMC Datasets5 versions - Latest release: 3 months ago - 5.22 thousand downloads total - 1 stars on GitHub - 1 maintainer
flowCyBar 1.44.0
Analyze flow cytometric data using gate information5 versions - Latest release: 3 months ago - 20.1 thousand downloads total - 1 maintainer
DepecheR 1.24.0
Determination of essential phenotypic elements of clusters in high-dimensional entities5 versions - Latest release: 3 months ago - 1 dependent package - 21.8 thousand downloads total - 1 maintainer
flowCut 1.18.0
Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis5 versions - Latest release: 3 months ago - 11.2 thousand downloads total - 1 maintainer
CNORfeeder 1.48.0
Integration of CellNOptR to add missing links5 versions - Latest release: 3 months ago - 26.1 thousand downloads total - 1 maintainer
scp 1.18.0
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis5 versions - Latest release: 3 months ago - 11.5 thousand downloads total - 26 stars on GitHub - 1 maintainer
Dino 1.14.0
Normalization of Single-Cell mRNA Sequencing Data5 versions - Latest release: 3 months ago - 6.41 thousand downloads total - 9 stars on GitHub - 1 maintainer
spatialHeatmap 2.14.1
spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions14 versions - Latest release: 29 days ago - 11.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 6.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 59.9 thousand downloads total - 5 stars on GitHub - 1 maintainer
fmcsR 1.50.0
Mismatch Tolerant Maximum Common Substructure Searching5 versions - Latest release: 3 months ago - 1 dependent package - 59.9 thousand downloads total - 5 stars on GitHub - 1 maintainer
CNORdt 1.50.0
Add-on to CellNOptR: Discretized time treatments5 versions - Latest release: 3 months ago - 25.8 thousand downloads total - 1 maintainer
MPRAnalyze 1.26.0
Statistical Analysis of MPRA data5 versions - Latest release: 3 months ago - 10.5 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 7.7% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 40.7 thousand downloads total - 2 maintainers
flowFP 1.66.0
Fingerprinting for Flow Cytometry5 versions - Latest release: 3 months ago - 2 dependent packages - 40.7 thousand downloads total - 2 maintainers
lisaClust 1.16.0
lisaClust: Clustering of Local Indicators of Spatial Association7 versions - Latest release: 3 months ago - 1 dependent package - 10.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
PANR 1.54.0
Posterior association networks and functional modules inferred from rich phenotypes of gene pertu...5 versions - Latest release: 3 months ago - 26.5 thousand downloads total - 1 maintainer
CFAssay 1.42.0
Statistical analysis for the Colony Formation Assay5 versions - Latest release: 3 months ago - 19 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 6 dependent packages - 43.2 thousand downloads total - 1 maintainer
CellNOptR 1.54.0
Training of boolean logic models of signalling networks using prior knowledge networks and pertur...5 versions - Latest release: 3 months ago - 6 dependent packages - 43.2 thousand downloads total - 1 maintainer
flowVS 1.40.0
Variance stabilization in flow cytometry (and microarrays)5 versions - Latest release: 3 months ago - 21.2 thousand downloads total - 1 maintainer
NanoStringNCTools 1.15.0
NanoString nCounter Tools6 versions - Latest release: 3 months ago - 2 dependent packages - 22.7 thousand downloads total - 1 maintainer
MetaCyto 1.30.0
MetaCyto: A package for meta-analysis of cytometry data5 versions - Latest release: 3 months ago - 14.1 thousand downloads total - 1 maintainer
Top 2.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 11 dependent packages - 302 thousand downloads total - 1 maintainer
flowViz 1.72.0
Visualization for flow cytometry5 versions - Latest release: 3 months ago - 11 dependent packages - 302 thousand downloads total - 1 maintainer
synlet 2.8.0
Hits Selection for Synthetic Lethal RNAi Screen Data5 versions - Latest release: 3 months ago - 15 thousand downloads total - 1 maintainer
iSEEu 1.20.0
iSEE Universe6 versions - Latest release: 2 months ago - 1 dependent package - 11.7 thousand downloads total - 9 stars on GitHub - 1 maintainer
seahtrue 1.2.0
Seahtrue revives XF data for structured data analysis2 versions - Latest release: 3 months ago - 1.88 thousand downloads total - 0 stars on GitHub - 1 maintainer
RNAinteract 1.54.0 removed
Estimate Pairwise Interactions from multidimensional features4 versions - Latest release: 8 months ago - 26 thousand downloads total - 1 maintainer
contiBAIT 1.32.0 removed
Improves Early Build Genome Assemblies using Strand-Seq Data3 versions - Latest release: about 1 year ago - 11.2 thousand downloads total - 1 maintainer
LineagePulse 1.21.0 removed
Differential expression analysis and model fitting for single-cell RNA-seq data2 versions - Latest release: over 1 year ago - 7.08 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 10.0% on bioconductor.org
2 versions - Latest release: over 1 year ago - 26.3 thousand downloads total - 1 maintainer
imageHTS 1.52.0 removed
Analysis of high-throughput microscopy-based screens2 versions - Latest release: over 1 year ago - 26.3 thousand downloads total - 1 maintainer
MIMOSA 1.37.0 removed
Mixture Models for Single-Cell Assays1 version - Latest release: almost 2 years ago - 15.6 thousand downloads total - 1 maintainer
Top 6.0% on bioconductor.org
3 versions - Latest release: about 1 year ago - 4 dependent packages - 61.9 thousand downloads total - 1 maintainer
cellHTS2 2.68.0 removed
Analysis of cell-based screens - revised version of cellHTS3 versions - Latest release: about 1 year ago - 4 dependent packages - 61.9 thousand downloads total - 1 maintainer
Related Keywords
Software
72
ImmunoOncology
44
Visualization
36
FlowCytometry
26
Clustering
23
SingleCell
23
Proteomics
19
CellBiology
18
GeneExpression
14
DataImport
11
Preprocessing
11
Transcriptomics
10
Infrastructure
10
FeatureExtraction
8
MicrotitrePlateAssay
8
Sequencing
8
Transcription
7
Spatial
7
StatisticalMethod
7
RNASeq
7
TimeCourse
7
QualityControl
6
DataRepresentation
6
Metabolomics
6
Cheminformatics
6
Pharmacogenomics
5
Regression
5
Pharmacogenetics
5
BiomedicalInformatics
5
Normalization
4
DimensionReduction
4
Classification
4
GUI
3
ProprietaryPlatforms
3
DifferentialExpression
3
Network
3
ExperimentalDesign
3
GeneTarget
3
Survival
3
hacktoberfest
2
single-cell
2
mRNAMicroarray
2
Genetics
2
MultipleComparison
2
BatchEffect
2
NetworkInference
2
GraphAndNetwork
2
Microarray
2
ATACSeq
2
Pathways
2
ShinyApps
2
Bioinformatics
2
r
2
gui
1
Epigenetics
1
MassSpectrometry
1
bioconductor
1
mass-spectrometry
1
proteomics
1
software
1
DNASeq
1
GeneSetEnrichment
1
TissueMicroarray
1
FunctionalPrediction
1
GO
1
GenomeAssembly
1
WholeGenome
1
human-cell-atlas
1
shiny
1
gene-expression
1
transcriptomics
1
visualization
1
feature-extraction
1
dimension-reduction
1
clustering
1
Coverage
1
dimensionality-reduction
1
CopyNumberVariation
1
SystemsBiology
1
aCGH
1
miRNA
1
GeneRegulation
1
diffusion-maps
1