bioconductor.org "CellBasedAssays" keyword
CytoGLMM 1.20.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments8 versions - Latest release: 5 months ago - 1 dependent package - 19 thousand downloads total - 3 stars on GitHub - 1 maintainer
iSEEfier 1.8.0
Streamlining the creation of initial states for starting an iSEE instance5 versions - Latest release: 5 months ago - 12.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
spatialHeatmap 2.18.2
spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions18 versions - Latest release: 4 months ago - 23.4 thousand downloads total - 6 stars on GitHub - 1 maintainer
netprioR 1.37.0
A model for network-based prioritisation of genes7 versions - Latest release: 5 months ago - 22.9 thousand downloads total - 1 maintainer
flowBin 1.48.0
Combining multitube flow cytometry data by binning7 versions - Latest release: 5 months ago - 37 thousand downloads total - 1 maintainer
Top 0.8% on bioconductor.org
10 versions - Latest release: 6 months ago - 51 dependent packages - 5.02 million downloads total - 1 maintainer
flowCore 2.24.0
flowCore: Basic structures for flow cytometry data10 versions - Latest release: 6 months ago - 51 dependent packages - 5.02 million downloads total - 1 maintainer
iSEEu 1.24.0
iSEE Universe8 versions - Latest release: 5 months ago - 1 dependent package - 21.9 thousand downloads total - 9 stars on GitHub - 1 maintainer
blase 1.2.1
Bulk Linking Analysis for Single-cell Experiments3 versions - Latest release: about 2 months ago - 5.29 thousand downloads total - 1 stars on GitHub - 1 maintainer
scp 1.22.0
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis7 versions - Latest release: 5 months ago - 31.5 thousand downloads total - 33 stars on GitHub - 1 maintainer
UCell 2.16.0
Rank-based signature enrichment analysis for single-cell data9 versions - Latest release: 5 months ago - 1 dependent package - 130 thousand downloads total - 209 stars on GitHub - 1 maintainer
lisaClust 1.20.0
lisaClust: Clustering of Local Indicators of Spatial Association9 versions - Latest release: 5 months ago - 1 dependent package - 21.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
seahtrue 1.6.0
Seahtrue revives XF data for structured data analysis4 versions - Latest release: 5 months ago - 10.5 thousand downloads total - 2 stars on GitHub - 1 maintainer
infinityFlow 1.22.0
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions8 versions - Latest release: 5 months ago - 17.4 thousand downloads total - 1 maintainer
GRmetrics 1.38.0
Calculate growth-rate inhibition (GR) metrics7 versions - Latest release: 5 months ago - 29.4 thousand downloads total - 1 stars on GitHub - 2 maintainers
Top 8.9% on bioconductor.org
7 versions - Latest release: 5 months ago - 6 dependent packages - 57.3 thousand downloads total - 1 maintainer
CellNOptR 1.58.0
Training of boolean logic models of signalling networks using prior knowledge networks and pertur...7 versions - Latest release: 5 months ago - 6 dependent packages - 57.3 thousand downloads total - 1 maintainer
MICSQTL 1.10.0
MICSQTL (Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci)6 versions - Latest release: 5 months ago - 11.3 thousand downloads total - 1 maintainer
Top 6.3% on bioconductor.org
7 versions - Latest release: 5 months ago - 8 dependent packages - 543 thousand downloads total - 17 stars on GitHub - 1 maintainer
ChemmineR 3.64.0
Cheminformatics Toolkit for R7 versions - Latest release: 5 months ago - 8 dependent packages - 543 thousand downloads total - 17 stars on GitHub - 1 maintainer
diffcyt 1.32.1
Differential discovery in high-dimensional cytometry via high-resolution clustering10 versions - Latest release: about 2 months ago - 5 dependent packages - 61.2 thousand downloads total - 25 stars on GitHub - 1 maintainer
islify 1.4.0
Automatic scoring and classification of cell-based assay images3 versions - Latest release: 5 months ago - 6.51 thousand downloads total - 1 maintainer
Top 3.4% on bioconductor.org
7 versions - Latest release: 5 months ago - 3 dependent packages - 213 thousand downloads total - 1 maintainer
FlowSOM 2.20.0
Using self-organizing maps for visualization and interpretation of cytometry data7 versions - Latest release: 5 months ago - 3 dependent packages - 213 thousand downloads total - 1 maintainer
PANR 1.58.0
Posterior association networks and functional modules inferred from rich phenotypes of gene pertu...7 versions - Latest release: 5 months ago - 36.2 thousand downloads total - 1 maintainer
eiR 1.52.0
Accelerated similarity searching of small molecules7 versions - Latest release: 4 months ago - 28.7 thousand downloads total - 4 stars on GitHub - 1 maintainer
flowGraph 1.20.0
Identifying differential cell populations in flow cytometry data accounting for marker frequency7 versions - Latest release: 4 months ago - 13.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
Dino 1.18.0
Normalization of Single-Cell mRNA Sequencing Data7 versions - Latest release: 5 months ago - 14.4 thousand downloads total - 11 stars on GitHub - 1 maintainer
spicyR 1.24.0
Spatial analysis of in situ cytometry data14 versions - Latest release: 5 months ago - 2 dependent packages - 27.7 thousand downloads total - 12 stars on GitHub - 1 maintainer
GeomxTools 3.16.0
NanoString GeoMx Tools10 versions - Latest release: 5 months ago - 3 dependent packages - 43.8 thousand downloads total - 1 maintainer
FuseSOM 1.14.0
A Correlation Based Multiview Self Organizing Maps Clustering For IMC Datasets7 versions - Latest release: 5 months ago - 13.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 9.4% on bioconductor.org
7 versions - Latest release: 5 months ago - 37.8 thousand downloads total - 1 maintainer
RTCA 1.64.0
Open-source toolkit to analyse data from xCELLigence System (RTCA)7 versions - Latest release: 5 months ago - 37.8 thousand downloads total - 1 maintainer
sights 1.38.0
Statistics and dIagnostic Graphs for HTS7 versions - Latest release: 5 months ago - 21.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
MAPFX 1.8.0
MAssively Parallel Flow cytometry Xplorer (MAPFX): A Toolbox for Analysing Data from the Massivel...6 versions - Latest release: 5 months ago - 9.47 thousand downloads total - 1 stars on GitHub - 1 maintainer
CDI 1.10.0
Clustering Deviation Index (CDI)9 versions - Latest release: 5 months ago - 11.2 thousand downloads total - 5 stars on GitHub - 1 maintainer
flowSpecs 1.26.0
Tools for processing of high-dimensional cytometry data7 versions - Latest release: 5 months ago - 18.8 thousand downloads total - 6 stars on GitHub - 1 maintainer
MetaCyto 1.34.0
MetaCyto: A package for meta-analysis of cytometry data7 versions - Latest release: 5 months ago - 22.6 thousand downloads total - 1 maintainer
bioassayR 1.50.0
Cross-target analysis of small molecule bioactivity7 versions - Latest release: 6 months ago - 39.6 thousand downloads total - 6 stars on GitHub - 1 maintainer
MPRAnalyze 1.30.0
Statistical Analysis of MPRA data7 versions - Latest release: 4 months ago - 18.6 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
7 versions - Latest release: 5 months ago - 2 dependent packages - 248 thousand downloads total - 10 stars on GitHub - 1 maintainer
ChemmineOB 1.50.0
R interface to a subset of OpenBabel functionalities7 versions - Latest release: 5 months ago - 2 dependent packages - 248 thousand downloads total - 10 stars on GitHub - 1 maintainer
censcyt 1.20.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry7 versions - Latest release: 5 months ago - 14.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
treeclimbR 1.8.0
An algorithm to find optimal signal levels in a tree6 versions - Latest release: 5 months ago - 9.37 thousand downloads total - 21 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
7 versions - Latest release: 5 months ago - 4 dependent packages - 224 thousand downloads total - 113 stars on GitHub - 1 maintainer
destiny 3.26.0
Creates diffusion maps7 versions - Latest release: 5 months ago - 4 dependent packages - 224 thousand downloads total - 113 stars on GitHub - 1 maintainer
flowCHIC 1.46.0
Analyze flow cytometric data using histogram information7 versions - Latest release: 4 months ago - 35.6 thousand downloads total - 1 maintainer
CNORdt 1.54.0
Add-on to CellNOptR: Discretized time treatments7 versions - Latest release: 4 months ago - 37.8 thousand downloads total - 1 maintainer
scECODA 1.0.1
Single-Cell Exploratory Compositional Data Analysis2 versions - Latest release: 3 months ago - 8.64 thousand downloads total - 10 stars on GitHub - 1 maintainer
synlet 2.12.0
Hits Selection for Synthetic Lethal RNAi Screen Data7 versions - Latest release: 6 months ago - 27.7 thousand downloads total - 1 maintainer
scTypeEval 1.0.0
Evaluation of cell type classifications in single-cell transcriptomics1 version - Latest release: 5 months ago - 6.18 thousand downloads total - 10 stars on GitHub - 1 maintainer
SpatialOmicsOverlay 1.12.0
Spatial Overlay for Omic Data from Nanostring GeoMx Data8 versions - Latest release: 5 months ago - 18 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
8 versions - Latest release: 5 months ago - 9 dependent packages - 269 thousand downloads total - 15 stars on GitHub - 2 maintainers
flowStats 4.24.0
Statistical methods for the analysis of flow cytometry data8 versions - Latest release: 5 months ago - 9 dependent packages - 269 thousand downloads total - 15 stars on GitHub - 2 maintainers
scFeatures 1.12.0
scFeatures: Multi-view representations of single-cell and spatial data for disease outcome predic...9 versions - Latest release: 4 months ago - 17.4 thousand downloads total - 17 stars on GitHub - 1 maintainer
Top 3.8% on bioconductor.org
10 versions - Latest release: 4 months ago - 9 dependent packages - 217 thousand downloads total - 66 stars on GitHub - 1 maintainer
ggcyto 1.40.0
Visualize Cytometry data with ggplot10 versions - Latest release: 4 months ago - 9 dependent packages - 217 thousand downloads total - 66 stars on GitHub - 1 maintainer
flowPlots 1.60.0
flowPlots: analysis plots and data class for gated flow cytometry data7 versions - Latest release: 5 months ago - 38.5 thousand downloads total - 1 maintainer
rcellminer 2.34.0
rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines8 versions - Latest release: 4 months ago - 38.1 thousand downloads total - 3 maintainers
NanoStringNCTools 1.20.0
NanoString nCounter Tools10 versions - Latest release: 5 months ago - 2 dependent packages - 47.5 thousand downloads total - 1 maintainer
Top 6.0% on bioconductor.org
3 versions - Latest release: over 2 years ago - 4 dependent packages - 61.9 thousand downloads total - 1 maintainer
cellHTS2 2.68.0 removed
Analysis of cell-based screens - revised version of cellHTS3 versions - Latest release: over 2 years ago - 4 dependent packages - 61.9 thousand downloads total - 1 maintainer
Top 7.7% on bioconductor.org
7 versions - Latest release: 5 months ago - 2 dependent packages - 62.9 thousand downloads total - 2 maintainers
flowFP 1.70.0
Fingerprinting for Flow Cytometry7 versions - Latest release: 5 months ago - 2 dependent packages - 62.9 thousand downloads total - 2 maintainers
Top 5.5% on bioconductor.org
7 versions - Latest release: 4 months ago - 8 dependent packages - 77.2 thousand downloads total - 231 stars on GitHub - 1 maintainer
iSEE 2.24.0
Interactive SummarizedExperiment Explorer7 versions - Latest release: 4 months ago - 8 dependent packages - 77.2 thousand downloads total - 231 stars on GitHub - 1 maintainer
flowCyBar 1.48.0
Analyze flow cytometric data using gate information7 versions - Latest release: 5 months ago - 29.4 thousand downloads total - 1 maintainer
gespeR 1.40.0 removed
Gene-Specific Phenotype EstimatoR5 versions - Latest release: over 1 year ago - 19.3 thousand downloads total - 1 maintainer
flowTime 1.36.0
Annotation and analysis of biological dynamical systems using flow cytometry7 versions - Latest release: 5 months ago - 27.8 thousand downloads total - 1 maintainer
DepecheR 1.28.0
Determination of essential phenotypic elements of clusters in high-dimensional entities7 versions - Latest release: 4 months ago - 1 dependent package - 34.5 thousand downloads total - 1 maintainer
Top 2.2% on bioconductor.org
7 versions - Latest release: 5 months ago - 11 dependent packages - 382 thousand downloads total - 1 maintainer
flowViz 1.76.0
Visualization for flow cytometry7 versions - Latest release: 5 months ago - 11 dependent packages - 382 thousand downloads total - 1 maintainer
CNORode 1.54.0
ODE add-on to CellNOptR7 versions - Latest release: 5 months ago - 1 dependent package - 43.4 thousand downloads total - 1 maintainer
CytoDx 1.32.0
Robust prediction of clinical outcomes using cytometry data without cell gating7 versions - Latest release: 5 months ago - 22.5 thousand downloads total - 1 maintainer
CFAssay 1.46.0
Statistical analysis for the Colony Formation Assay7 versions - Latest release: 5 months ago - 28.2 thousand downloads total - 1 maintainer
flowCut 1.22.0
Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis7 versions - Latest release: 5 months ago - 25.8 thousand downloads total - 1 maintainer
CNORfeeder 1.52.0
Integration of CellNOptR to add missing links7 versions - Latest release: 5 months ago - 39.5 thousand downloads total - 1 maintainer
flowBeads 1.50.0
flowBeads: Analysis of flow bead data7 versions - Latest release: 5 months ago - 35.7 thousand downloads total - 1 maintainer
flowVS 1.44.0
Variance stabilization in flow cytometry (and microarrays)7 versions - Latest release: 5 months ago - 34.3 thousand downloads total - 1 maintainer
cicero 1.30.0
Predict cis-co-accessibility from single-cell chromatin accessibility data8 versions - Latest release: 5 months ago - 50.4 thousand downloads total - 1 maintainer
immunoClust 1.44.0
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry7 versions - Latest release: 5 months ago - 27.7 thousand downloads total - 1 maintainer
Top 6.1% on bioconductor.org
7 versions - Latest release: 4 months ago - 1 dependent package - 76.8 thousand downloads total - 6 stars on GitHub - 1 maintainer
fmcsR 1.54.0
Mismatch Tolerant Maximum Common Substructure Searching7 versions - Latest release: 4 months ago - 1 dependent package - 76.8 thousand downloads total - 6 stars on GitHub - 1 maintainer
staRank 1.50.0 removed
Stability Ranking5 versions - Latest release: over 1 year ago - 22.1 thousand downloads total - 1 maintainer
RNAinteract 1.54.0 removed
Estimate Pairwise Interactions from multidimensional features4 versions - Latest release: almost 2 years ago - 26 thousand downloads total - 1 maintainer
contiBAIT 1.32.0 removed
Improves Early Build Genome Assemblies using Strand-Seq Data3 versions - Latest release: over 2 years ago - 11.2 thousand downloads total - 1 maintainer
LineagePulse 1.21.0 removed
Differential expression analysis and model fitting for single-cell RNA-seq data2 versions - Latest release: almost 3 years ago - 7.08 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 10.0% on bioconductor.org
2 versions - Latest release: almost 3 years ago - 26.3 thousand downloads total - 1 maintainer
imageHTS 1.52.0 removed
Analysis of high-throughput microscopy-based screens2 versions - Latest release: almost 3 years ago - 26.3 thousand downloads total - 1 maintainer
MIMOSA 1.37.0 removed
Mixture Models for Single-Cell Assays1 version - Latest release: almost 3 years ago - 15.6 thousand downloads total - 1 maintainer
Related Keywords
Software
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ImmunoOncology
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Visualization
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FlowCytometry
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SingleCell
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Clustering
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CellBiology
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GeneExpression
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Transcriptomics
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Preprocessing
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DataImport
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Infrastructure
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FeatureExtraction
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Sequencing
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single-cell
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visualization
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transcriptomics
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shiny
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human-cell-atlas
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gui
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GenomeAssembly
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feature-extraction
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dimension-reduction
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