bioconductor.org "CellBasedAssays" keyword
Top 0.8% on bioconductor.org
9 versions - Latest release: 2 months ago - 51 dependent packages - 4.96 million downloads total - 1 maintainer
flowCore 2.22.1
flowCore: Basic structures for flow cytometry data9 versions - Latest release: 2 months ago - 51 dependent packages - 4.96 million downloads total - 1 maintainer
infinityFlow 1.20.2
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions7 versions - Latest release: about 1 month ago - 11 thousand downloads total - 1 maintainer
Top 2.2% on bioconductor.org
6 versions - Latest release: 3 months ago - 11 dependent packages - 369 thousand downloads total - 1 maintainer
flowViz 1.74.0
Visualization for flow cytometry6 versions - Latest release: 3 months ago - 11 dependent packages - 369 thousand downloads total - 1 maintainer
CDI 1.8.2
Clustering Deviation Index (CDI)7 versions - Latest release: 3 days ago - 5.96 thousand downloads total - 5 stars on GitHub - 1 maintainer
flowVS 1.42.0
Variance stabilization in flow cytometry (and microarrays)6 versions - Latest release: 3 months ago - 25.1 thousand downloads total - 1 maintainer
NanoStringNCTools 1.18.0
NanoString nCounter Tools9 versions - Latest release: 3 months ago - 2 dependent packages - 32.6 thousand downloads total - 1 maintainer
flowPlots 1.58.0
flowPlots: analysis plots and data class for gated flow cytometry data6 versions - Latest release: 4 months ago - 30.1 thousand downloads total - 1 maintainer
MetaCyto 1.32.0
MetaCyto: A package for meta-analysis of cytometry data6 versions - Latest release: 3 months ago - 17.1 thousand downloads total - 1 maintainer
MICSQTL 1.8.0
MICSQTL (Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci)5 versions - Latest release: 3 months ago - 5.97 thousand downloads total - 1 maintainer
FuseSOM 1.12.0
A Correlation Based Multiview Self Organizing Maps Clustering For IMC Datasets6 versions - Latest release: 3 months ago - 7.62 thousand downloads total - 1 stars on GitHub - 1 maintainer
lisaClust 1.18.0
lisaClust: Clustering of Local Indicators of Spatial Association8 versions - Latest release: 3 months ago - 1 dependent package - 14.4 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 3.4% on bioconductor.org
6 versions - Latest release: 3 months ago - 3 dependent packages - 196 thousand downloads total - 1 maintainer
FlowSOM 2.18.0
Using self-organizing maps for visualization and interpretation of cytometry data6 versions - Latest release: 3 months ago - 3 dependent packages - 196 thousand downloads total - 1 maintainer
flowCHIC 1.44.0
Analyze flow cytometric data using histogram information6 versions - Latest release: 3 months ago - 23.1 thousand downloads total - 1 maintainer
flowTime 1.34.0
Annotation and analysis of biological dynamical systems using flow cytometry6 versions - Latest release: 3 months ago - 17.2 thousand downloads total - 1 maintainer
Top 9.4% on bioconductor.org
6 versions - Latest release: 3 months ago - 34 thousand downloads total - 1 maintainer
RTCA 1.62.0
Open-source toolkit to analyse data from xCELLigence System (RTCA)6 versions - Latest release: 3 months ago - 34 thousand downloads total - 1 maintainer
GeomxTools 3.14.0
NanoString GeoMx Tools9 versions - Latest release: 4 months ago - 3 dependent packages - 35.3 thousand downloads total - 1 maintainer
blase 1.0.0
Bulk Linking Analysis for Single-cell Experiments1 version - Latest release: 4 months ago - 965 downloads total - 0 stars on GitHub - 1 maintainer
immunoClust 1.42.0
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry6 versions - Latest release: 3 months ago - 20.8 thousand downloads total - 1 maintainer
CFAssay 1.44.0
Statistical analysis for the Colony Formation Assay6 versions - Latest release: 3 months ago - 21.4 thousand downloads total - 1 maintainer
diffcyt 1.30.0
Differential discovery in high-dimensional cytometry via high-resolution clustering8 versions - Latest release: 3 months ago - 5 dependent packages - 52.1 thousand downloads total - 21 stars on GitHub - 1 maintainer
CytoDx 1.30.0
Robust prediction of clinical outcomes using cytometry data without cell gating6 versions - Latest release: 3 months ago - 15.1 thousand downloads total - 1 maintainer
flowBin 1.46.0
Combining multitube flow cytometry data by binning6 versions - Latest release: 3 months ago - 24.5 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 6 dependent packages - 49.9 thousand downloads total - 1 maintainer
CellNOptR 1.56.0
Training of boolean logic models of signalling networks using prior knowledge networks and pertur...6 versions - Latest release: 3 months ago - 6 dependent packages - 49.9 thousand downloads total - 1 maintainer
cicero 1.28.0
Predict cis-co-accessibility from single-cell chromatin accessibility data6 versions - Latest release: 3 months ago - 39.3 thousand downloads total - 1 maintainer
SpatialOmicsOverlay 1.10.0
Spatial Overlay for Omic Data from Nanostring GeoMx Data7 versions - Latest release: 4 months ago - 7.25 thousand downloads total - 1 maintainer
spicyR 1.22.0
Spatial analysis of in situ cytometry data13 versions - Latest release: 4 months ago - 2 dependent packages - 20 thousand downloads total - 10 stars on GitHub - 1 maintainer
flowSpecs 1.24.0
Tools for processing of high-dimensional cytometry data6 versions - Latest release: 3 months ago - 12.4 thousand downloads total - 6 stars on GitHub - 1 maintainer
MAPFX 1.6.3
MAssively Parallel Flow cytometry Xplorer (MAPFX): A Toolbox for Analysing Data from the Massivel...5 versions - Latest release: about 1 month ago - 4.98 thousand downloads total - 1 stars on GitHub - 1 maintainer
flowCut 1.20.0
Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis6 versions - Latest release: 3 months ago - 14.6 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
6 versions - Latest release: 4 months ago - 2 dependent packages - 241 thousand downloads total - 10 stars on GitHub - 1 maintainer
ChemmineOB 1.48.0
R interface to a subset of OpenBabel functionalities6 versions - Latest release: 4 months ago - 2 dependent packages - 241 thousand downloads total - 10 stars on GitHub - 1 maintainer
CNORfeeder 1.50.0
Integration of CellNOptR to add missing links6 versions - Latest release: 3 months ago - 29.5 thousand downloads total - 1 maintainer
CytoGLMM 1.18.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments7 versions - Latest release: 4 months ago - 1 dependent package - 9.81 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 6.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 8 dependent packages - 530 thousand downloads total - 16 stars on GitHub - 1 maintainer
ChemmineR 3.62.0
Cheminformatics Toolkit for R6 versions - Latest release: 3 months ago - 8 dependent packages - 530 thousand downloads total - 16 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
6 versions - Latest release: 4 months ago - 4 dependent packages - 198 thousand downloads total - 89 stars on GitHub - 1 maintainer
destiny 3.24.0
Creates diffusion maps6 versions - Latest release: 4 months ago - 4 dependent packages - 198 thousand downloads total - 89 stars on GitHub - 1 maintainer
CNORode 1.52.0
ODE add-on to CellNOptR6 versions - Latest release: 3 months ago - 1 dependent package - 34.8 thousand downloads total - 1 maintainer
spatialHeatmap 2.16.3
spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions16 versions - Latest release: about 1 month ago - 14.4 thousand downloads total - 4 stars on GitHub - 1 maintainer
sights 1.36.0
Statistics and dIagnostic Graphs for HTS6 versions - Latest release: 4 months ago - 16.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
DepecheR 1.26.0
Determination of essential phenotypic elements of clusters in high-dimensional entities6 versions - Latest release: 4 months ago - 1 dependent package - 24.5 thousand downloads total - 1 maintainer
treeclimbR 1.6.0
An algorithm to find optimal signal levels in a tree5 versions - Latest release: 4 months ago - 5.12 thousand downloads total - 20 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
6 versions - Latest release: 3 months ago - 8 dependent packages - 63.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
iSEE 2.22.0
Interactive SummarizedExperiment Explorer6 versions - Latest release: 3 months ago - 8 dependent packages - 63.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
Top 7.7% on bioconductor.org
6 versions - Latest release: 4 months ago - 2 dependent packages - 46.6 thousand downloads total - 2 maintainers
flowFP 1.68.0
Fingerprinting for Flow Cytometry6 versions - Latest release: 4 months ago - 2 dependent packages - 46.6 thousand downloads total - 2 maintainers
rcellminer 2.32.0
rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines7 versions - Latest release: 4 months ago - 24.3 thousand downloads total - 3 maintainers
synlet 2.10.0
Hits Selection for Synthetic Lethal RNAi Screen Data6 versions - Latest release: 4 months ago - 17.4 thousand downloads total - 1 maintainer
islify 1.2.0
Automatic scoring and classification of cell-based assay images2 versions - Latest release: 4 months ago - 2.42 thousand downloads total - 1 maintainer
flowCyBar 1.46.0
Analyze flow cytometric data using gate information6 versions - Latest release: 3 months ago - 22.3 thousand downloads total - 1 maintainer
eiR 1.50.0
Accelerated similarity searching of small molecules6 versions - Latest release: 4 months ago - 22.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
censcyt 1.18.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry6 versions - Latest release: 3 months ago - 8.96 thousand downloads total - 0 stars on GitHub - 1 maintainer
iSEEu 1.22.0
iSEE Universe7 versions - Latest release: 4 months ago - 1 dependent package - 15.2 thousand downloads total - 9 stars on GitHub - 1 maintainer
GRmetrics 1.36.0
Calculate growth-rate inhibition (GR) metrics6 versions - Latest release: 4 months ago - 23.3 thousand downloads total - 1 stars on GitHub - 2 maintainers
scFeatures 1.10.9
scFeatures: Multi-view representations of single-cell and spatial data for disease outcome predic...8 versions - Latest release: 18 days ago - 6.72 thousand downloads total - 14 stars on GitHub - 1 maintainer
iSEEfier 1.6.0
Streamlining the creation of initial states for starting an iSEE instance4 versions - Latest release: 4 months ago - 5 thousand downloads total - 0 stars on GitHub - 1 maintainer
CNORdt 1.52.0
Add-on to CellNOptR: Discretized time treatments6 versions - Latest release: 3 months ago - 28.5 thousand downloads total - 1 maintainer
Top 3.8% on bioconductor.org
9 versions - Latest release: about 1 month ago - 9 dependent packages - 190 thousand downloads total - 61 stars on GitHub - 1 maintainer
ggcyto 1.38.1
Visualize Cytometry data with ggplot9 versions - Latest release: about 1 month ago - 9 dependent packages - 190 thousand downloads total - 61 stars on GitHub - 1 maintainer
flowGraph 1.18.0
Identifying differential cell populations in flow cytometry data accounting for marker frequency6 versions - Latest release: 4 months ago - 8.92 thousand downloads total - 1 stars on GitHub - 1 maintainer
UCell 2.14.0
Rank-based signature enrichment analysis for single-cell data8 versions - Latest release: 4 months ago - 1 dependent package - 86 thousand downloads total - 166 stars on GitHub - 1 maintainer
Top 6.1% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 68.8 thousand downloads total - 5 stars on GitHub - 1 maintainer
fmcsR 1.52.0
Mismatch Tolerant Maximum Common Substructure Searching6 versions - Latest release: 4 months ago - 1 dependent package - 68.8 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 2.9% on bioconductor.org
7 versions - Latest release: 4 months ago - 9 dependent packages - 246 thousand downloads total - 14 stars on GitHub - 2 maintainers
flowStats 4.22.0
Statistical methods for the analysis of flow cytometry data7 versions - Latest release: 4 months ago - 9 dependent packages - 246 thousand downloads total - 14 stars on GitHub - 2 maintainers
bioassayR 1.48.0
Cross-target analysis of small molecule bioactivity6 versions - Latest release: 4 months ago - 33.7 thousand downloads total - 6 stars on GitHub - 1 maintainer
flowBeads 1.48.0
flowBeads: Analysis of flow bead data6 versions - Latest release: 3 months ago - 26 thousand downloads total - 1 maintainer
seahtrue 1.4.0
Seahtrue revives XF data for structured data analysis3 versions - Latest release: 3 months ago - 3.93 thousand downloads total - 0 stars on GitHub - 1 maintainer
MPRAnalyze 1.28.0
Statistical Analysis of MPRA data6 versions - Latest release: 3 months ago - 13.3 thousand downloads total - 11 stars on GitHub - 1 maintainer
Dino 1.16.0
Normalization of Single-Cell mRNA Sequencing Data6 versions - Latest release: 4 months ago - 8.75 thousand downloads total - 10 stars on GitHub - 1 maintainer
scp 1.20.0
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis6 versions - Latest release: 4 months ago - 19.5 thousand downloads total - 30 stars on GitHub - 1 maintainer
netprioR 1.36.0
A model for network-based prioritisation of genes6 versions - Latest release: 4 months ago - 14.7 thousand downloads total - 1 maintainer
PANR 1.56.0
Posterior association networks and functional modules inferred from rich phenotypes of gene pertu...6 versions - Latest release: 3 months ago - 29 thousand downloads total - 1 maintainer
staRank 1.50.0 removed
Stability Ranking5 versions - Latest release: 11 months ago - 22.1 thousand downloads total - 1 maintainer
gespeR 1.40.0 removed
Gene-Specific Phenotype EstimatoR5 versions - Latest release: 11 months ago - 19.3 thousand downloads total - 1 maintainer
RNAinteract 1.54.0 removed
Estimate Pairwise Interactions from multidimensional features4 versions - Latest release: over 1 year ago - 26 thousand downloads total - 1 maintainer
contiBAIT 1.32.0 removed
Improves Early Build Genome Assemblies using Strand-Seq Data3 versions - Latest release: almost 2 years ago - 11.2 thousand downloads total - 1 maintainer
LineagePulse 1.21.0 removed
Differential expression analysis and model fitting for single-cell RNA-seq data2 versions - Latest release: over 2 years ago - 7.08 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 10.0% on bioconductor.org
2 versions - Latest release: over 2 years ago - 26.3 thousand downloads total - 1 maintainer
imageHTS 1.52.0 removed
Analysis of high-throughput microscopy-based screens2 versions - Latest release: over 2 years ago - 26.3 thousand downloads total - 1 maintainer
MIMOSA 1.37.0 removed
Mixture Models for Single-Cell Assays1 version - Latest release: over 2 years ago - 15.6 thousand downloads total - 1 maintainer
Top 6.0% on bioconductor.org
3 versions - Latest release: almost 2 years ago - 4 dependent packages - 61.9 thousand downloads total - 1 maintainer
cellHTS2 2.68.0 removed
Analysis of cell-based screens - revised version of cellHTS3 versions - Latest release: almost 2 years ago - 4 dependent packages - 61.9 thousand downloads total - 1 maintainer
Related Keywords
Software
73
ImmunoOncology
44
Visualization
36
FlowCytometry
26
SingleCell
24
Clustering
23
CellBiology
19
Proteomics
19
GeneExpression
15
DataImport
11
Preprocessing
11
Transcriptomics
11
Infrastructure
10
Sequencing
9
MicrotitrePlateAssay
8
FeatureExtraction
8
TimeCourse
8
Transcription
8
RNASeq
8
StatisticalMethod
7
Spatial
7
DataRepresentation
6
Metabolomics
6
Cheminformatics
6
QualityControl
6
Pharmacogenomics
5
Pharmacogenetics
5
BiomedicalInformatics
5
Regression
5
DimensionReduction
4
Normalization
4
Classification
4
Network
3
GUI
3
DifferentialExpression
3
GeneTarget
3
Survival
3
ExperimentalDesign
3
ProprietaryPlatforms
3
MultipleComparison
2
BatchEffect
2
ShinyApps
2
hacktoberfest
2
single-cell
2
GraphAndNetwork
2
Bioinformatics
2
r
2
mRNAMicroarray
2
NetworkInference
2
ATACSeq
2
Pathways
2
Microarray
2
Genetics
2
visualization
1
CopyNumberVariation
1
SystemsBiology
1
aCGH
1
miRNA
1
GeneSetEnrichment
1
FunctionalPrediction
1
GO
1
MassSpectrometry
1
bioconductor
1
mass-spectrometry
1
proteomics
1
software
1
GenomeAssembly
1
WholeGenome
1
transcriptomics
1
shiny
1
human-cell-atlas
1
Coverage
1
gui
1
gene-expression
1
feature-extraction
1
dimension-reduction
1
clustering
1
Epigenetics
1
GeneRegulation
1
TissueMicroarray
1
DNASeq
1
diffusion-maps
1
dimensionality-reduction
1