An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

bioconductor.org "Infrastructure" keyword

Top 4.6% on bioconductor.org
DelayedMatrixStats 1.34.0
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects
8 versions - Latest release: 5 months ago - 45 dependent packages - 2.18 million downloads total - 15 stars on GitHub - 1 maintainer
Seqinfo 1.2.0
A simple S4 class for storing basic information about a collection of genomic sequences
2 versions - Latest release: 4 months ago - 935 thousand downloads total - 1 maintainer
ReUseData 1.12.0
Reusable and reproducible Data Management
9 versions - Latest release: 5 months ago - 9.7 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
scater 1.40.2
Single-Cell Analysis Toolkit for Gene Expression Data in R
13 versions - Latest release: 3 months ago - 96 dependent packages - 1.23 million downloads total - 1 maintainer
systemPipeShiny 1.22.0
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization
7 versions - Latest release: 5 months ago - 16.9 thousand downloads total - 1 maintainer
SpectriPy 1.2.1
Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python
3 versions - Latest release: 3 months ago - 5.31 thousand downloads total - 13 stars on GitHub - 1 maintainer
GCPtools 1.2.1
Tools for working with gcloud and gsutil
3 versions - Latest release: 4 months ago - 8.01 thousand downloads total - 0 stars on GitHub - 1 maintainer
shinybiocloader 1.2.0
Use a Shiny Bioconductor CSS loader
2 versions - Latest release: 5 months ago - 3.64 thousand downloads total - 0 stars on GitHub - 1 maintainer
DeeDeeExperiment 1.2.0
DeeDeeExperiment: An S4 Class for managing and exploring omics analysis results
2 versions - Latest release: 5 months ago - 6.04 thousand downloads total - 1 stars on GitHub - 1 maintainer
Bioc.gff 1.2.0
Read and write GFF and GTF files
2 versions - Latest release: 5 months ago - 4.43 thousand downloads total - 0 stars on GitHub - 1 maintainer
biocmake 1.4.0 💰
CMake for Bioconductor
4 versions - Latest release: 5 months ago - 91.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
AnVIL 1.24.1
Bioconductor on the AnVIL compute environment
20 versions - Latest release: about 1 month ago - 4 dependent packages - 69.2 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 2.2% on bioconductor.org
ggbio 1.60.0
Visualization tools for genomic data
8 versions - Latest release: 4 months ago - 27 dependent packages - 628 thousand downloads total - 116 stars on GitHub - 1 maintainer
Top 1.9% on bioconductor.org
MSnbase 2.38.1
Base Functions and Classes for Mass Spectrometry and Proteomics
10 versions - Latest release: about 2 months ago - 30 dependent packages - 660 thousand downloads total - 138 stars on GitHub - 1 maintainer
Top 3.6% on bioconductor.org
SeqArray 1.52.1
Data management of large-scale whole-genome sequence variant calls using GDS files
21 versions - Latest release: 4 months ago - 11 dependent packages - 174 thousand downloads total - 49 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
gdsfmt 1.48.2
R Interface to CoreArray Genomic Data Structure (GDS) Files
12 versions - Latest release: 3 months ago - 18 dependent packages - 374 thousand downloads total - 20 stars on GitHub - 1 maintainer
Top 9.9% on bioconductor.org
affyio 1.82.0
Tools for parsing Affymetrix data files
7 versions - Latest release: 4 months ago - 12 dependent packages - 2.02 million downloads total - 4 stars on GitHub - 1 maintainer
Top 1.0% on bioconductor.org
SingleCellExperiment 1.34.0
S4 Classes for Single Cell Data
9 versions - Latest release: 5 months ago - 201 dependent packages - 2.42 million downloads total - 1 maintainer
Top 7.0% on bioconductor.org
Rhdf5lib 2.0.0
hdf5 library as an R package
9 versions - Latest release: 5 months ago - 3 dependent packages - 3.47 million downloads total - 7 stars on GitHub - 1 maintainer
Top 8.6% on bioconductor.org
Spectra 1.22.2
Spectra Infrastructure for Mass Spectrometry Data
13 versions - Latest release: 3 months ago - 15 dependent packages - 198 thousand downloads total - 47 stars on GitHub - 1 maintainer
Top 0.9% on bioconductor.org
XVector 0.52.0
Foundation of external vector representation and manipulation in Bioconductor
7 versions - Latest release: 5 months ago - 36 dependent packages - 10.5 million downloads total - 1 maintainer
BiocAzul 1.0.3
Programmatic Access to the Azul API
2 versions - Latest release: 4 months ago - 2.71 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 0.5% on bioconductor.org
DelayedArray 0.38.2
A unified framework for working transparently with on-disk and in-memory array-like datasets
12 versions - Latest release: 4 months ago - 111 dependent packages - 9.19 million downloads total - 1 maintainer
GenomicTuples 1.46.0
Representation and Manipulation of Genomic Tuples
7 versions - Latest release: 5 months ago - 36 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 0.5% on bioconductor.org
GenomicFeatures 1.64.0
Query the gene models of a given organism/assembly
10 versions - Latest release: 5 months ago - 183 dependent packages - 4.63 million downloads total - 1 maintainer
VariantExperiment 1.26.0
A RangedSummarizedExperiment Container for VCF/GDS Data with GDS Backend
8 versions - Latest release: 5 months ago - 12.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 0.8% on bioconductor.org
flowCore 2.24.0
flowCore: Basic structures for flow cytometry data
10 versions - Latest release: 5 months ago - 51 dependent packages - 5.02 million downloads total - 1 maintainer
fraq 1.0.2
A High-Throughput and Extensible Toolkit for Processing FASTQ Data
2 versions - Latest release: about 1 month ago - 2.95 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 1.0% on bioconductor.org
MatrixGenerics 1.24.0
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
8 versions - Latest release: 5 months ago - 45 dependent packages - 6.21 million downloads total - 1 maintainer
Top 1.8% on bioconductor.org
oligoClasses 1.74.0
Classes for high-throughput arrays supported by oligo and crlmm
7 versions - Latest release: 5 months ago - 12 dependent packages - 481 thousand downloads total - 1 maintainer
Top 1.4% on bioconductor.org
HDF5Array 1.40.0
HDF5 datasets as array-like objects in R
9 versions - Latest release: 5 months ago - 54 dependent packages - 2.38 million downloads total - 1 maintainer
Top 3.9% on bioconductor.org
preprocessCore 1.74.0
A collection of pre-processing functions
7 versions - Latest release: 5 months ago - 51 dependent packages - 3.11 million downloads total - 19 stars on GitHub - 1 maintainer
CellBench 1.28.0
Construct Benchmarks for Single Cell Analysis Methods
7 versions - Latest release: 5 months ago - 2 dependent packages - 24.6 thousand downloads total - 33 stars on GitHub - 1 maintainer
Top 1.1% on bioconductor.org
BiocParallel 1.46.0
Bioconductor facilities for parallel evaluation
12 versions - Latest release: 5 months ago - 377 dependent packages - 9.68 million downloads total - 69 stars on GitHub - 1 maintainer
plyinteractions 1.10.0
Extending tidy verbs to genomic interactions
8 versions - Latest release: 4 months ago - 12.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 0.2% on bioconductor.org
Biostrings 2.80.2
Efficient manipulation of biological strings
14 versions - Latest release: 25 days ago - 333 dependent packages - 10.4 million downloads total - 1 maintainer
rebook 1.22.0
Re-using Content in Bioconductor Books
7 versions - Latest release: 5 months ago - 22.2 thousand downloads total - 1 maintainer
DelayedTensor 1.18.0
R package for sparse and out-of-core arithmetic and decomposition of Tensor
7 versions - Latest release: 5 months ago - 15.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
ReducedExperiment 1.4.0
Containers and tools for dimensionally-reduced -omics representations
4 versions - Latest release: 5 months ago - 7.65 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 2.1% on bioconductor.org
biovizBase 1.60.0
Basic graphic utilities for visualization of genomic data.
7 versions - Latest release: 5 months ago - 17 dependent packages - 1.44 million downloads total - 1 maintainer
Top 4.5% on bioconductor.org
basilisk.utils 1.24.0
Centralized Conda Installation for Bioconductor Packages
8 versions - Latest release: 5 months ago - 2 dependent packages - 291 thousand downloads total - 1 maintainer
Top 4.4% on bioconductor.org
tkWidgets 1.90.0
R based tk widgets
7 versions - Latest release: 5 months ago - 7 dependent packages - 304 thousand downloads total - 1 maintainer
Top 6.3% on bioconductor.org
ChemmineR 3.64.0
Cheminformatics Toolkit for R
7 versions - Latest release: 5 months ago - 8 dependent packages - 543 thousand downloads total - 17 stars on GitHub - 1 maintainer
Top 0.1% on bioconductor.org
S4Vectors 0.50.3
Foundation of vector-like and list-like containers in Bioconductor
14 versions - Latest release: 17 days ago - 740 dependent packages - 12.8 million downloads total - 1 maintainer
SpatialExperimentIO 1.4.0
Read in Xenium, CosMx, MERSCOPE or STARmapPLUS data as SpatialExperiment object
3 versions - Latest release: 5 months ago - 8.44 thousand downloads total - 19 stars on GitHub - 1 maintainer
pipeFrame 1.28.0
Pipeline framework for bioinformatics in R
7 versions - Latest release: 4 months ago - 2 dependent packages - 23.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
GenomicCoordinates 1.0.0
Enhanced string parsing for genomic coordinates
1 version - Latest release: 5 months ago - 3 thousand downloads total - 1 maintainer
Top 8.2% on bioconductor.org
ChIPsim 1.66.0
Simulation of ChIP-seq experiments
7 versions - Latest release: 5 months ago - 55.9 thousand downloads total - 1 maintainer
AnVILAz 1.6.0
R / Bioconductor Support for the AnVIL Azure Platform
4 versions - Latest release: 4 months ago - 7.43 thousand downloads total - 0 stars on GitHub - 1 maintainer
chimeraviz 1.38.0
Visualization tools for gene fusions
7 versions - Latest release: 5 months ago - 32.5 thousand downloads total - 40 stars on GitHub - 1 maintainer
DFplyr 1.6.0 💰
A `DataFrame` (`S4Vectors`) backend for `dplyr`
5 versions - Latest release: 4 months ago - 8.01 thousand downloads total - 21 stars on GitHub - 1 maintainer
MsBackendSql 1.12.0
SQL-based Mass Spectrometry Data Backend
7 versions - Latest release: 5 months ago - 12.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 0.1% on bioconductor.org
IRanges 2.46.0
Foundation of integer range manipulation in Bioconductor
9 versions - Latest release: 5 months ago - 563 dependent packages - 12.8 million downloads total - 1 maintainer
Top 4.1% on bioconductor.org
RaggedExperiment 1.36.0
Representation of Sparse Experiments and Assays Across Samples
9 versions - Latest release: 5 months ago - 12 dependent packages - 133 thousand downloads total - 5 stars on GitHub - 1 maintainer
beachmat.tiledb 1.4.0
beachmat bindings for TileDB-backed matrices
3 versions - Latest release: 5 months ago - 5.06 thousand downloads total - 0 stars on GitHub - 1 maintainer
OSTA.data 1.4.0
OSTA book data
3 versions - Latest release: 5 months ago - 7.92 thousand downloads total - 2 stars on GitHub - 1 maintainer
XeniumIO 1.4.0
Import and represent Xenium data from the 10X Xenium Analyzer
3 versions - Latest release: 5 months ago - 6.26 thousand downloads total - 0 stars on GitHub - 1 maintainer
SharedObject 1.26.2
Sharing R objects across multiple R processes without memory duplication
8 versions - Latest release: about 2 months ago - 1 dependent package - 19.7 thousand downloads total - 37 stars on GitHub - 1 maintainer
RBedMethyl 1.0.0
Disk-backed Representation of ONT bedMethyl Files
1 version - Latest release: 5 months ago - 3.36 thousand downloads total - 0 stars on GitHub - 1 maintainer
gDRutils 1.10.0
A package with helper functions for processing drug response data
7 versions - Latest release: 5 months ago - 3 dependent packages - 15 thousand downloads total - 2 stars on GitHub - 1 maintainer
BiocBook 1.10.0
Write, containerize, publish and version Quarto books with Bioconductor
6 versions - Latest release: 5 months ago - 12.1 thousand downloads total - 1 maintainer
AnVILBase 1.6.0
Generic functions for interacting with the AnVIL ecosystem
4 versions - Latest release: 5 months ago - 18.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
SRAdb 1.74.0
A compilation of metadata from NCBI SRA and tools
8 versions - Latest release: 5 months ago - 146 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
convert 1.88.0
Convert Microarray Data Objects
7 versions - Latest release: 5 months ago - 4 dependent packages - 87.7 thousand downloads total - 1 maintainer
BaseSpaceR 1.56.0
R SDK for BaseSpace RESTful API
7 versions - Latest release: 5 months ago - 39.4 thousand downloads total - 1 maintainer
gDRimport 1.10.0
Package for handling the import of dose-response data
8 versions - Latest release: 5 months ago - 2 dependent packages - 11.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
MsBackendMetaboLights 1.6.1
Retrieve Mass Spectrometry Data from MetaboLights
5 versions - Latest release: 3 months ago - 10.3 thousand downloads total - 2 stars on GitHub - 1 maintainer
AllelicImbalance 1.50.0
Investigates Allele Specific Expression
8 versions - Latest release: 4 months ago - 44.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
koinar 1.6.0
KoinaR - Remote machine learning inference using Koina
5 versions - Latest release: 5 months ago - 10.1 thousand downloads total - 57 stars on GitHub - 1 maintainer
Top 2.5% on bioconductor.org
mzR 2.46.0
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
7 versions - Latest release: 5 months ago - 23 dependent packages - 44 stars on GitHub - 1 maintainer
BiocBuildReporter 1.0.1
Functions to process a bioconductor build report database
2 versions - Latest release: 4 months ago - 3.16 thousand downloads total - 0 stars on GitHub - 1 maintainer
gDRstyle 1.10.0
A package with style requirements for the gDR suite
7 versions - Latest release: 5 months ago - 4 dependent packages - 11.7 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 9.0% on bioconductor.org
illuminaio 0.54.0
Parsing Illumina Microarray Output Files
7 versions - Latest release: 5 months ago - 12 dependent packages - 652 thousand downloads total - 5 stars on GitHub - 1 maintainer
scviR 1.12.0
experimental inferface from R to scvi-tools
7 versions - Latest release: 5 months ago - 8.8 thousand downloads total - 7 stars on GitHub - 1 maintainer
RNAmodR 1.26.0
Detection of post-transcriptional modifications in high throughput sequencing data
7 versions - Latest release: 5 months ago - 3 dependent packages - 20.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
BiocHail 1.12.0
basilisk and hail
8 versions - Latest release: 5 months ago - 7.33 thousand downloads total - 6 stars on GitHub - 1 maintainer
eiR 1.52.0
Accelerated similarity searching of small molecules
7 versions - Latest release: 4 months ago - 28.7 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
MsCoreUtils 1.24.0
Core Utils for Mass Spectrometry Data
10 versions - Latest release: 5 months ago - 19 dependent packages - 393 thousand downloads total - 17 stars on GitHub - 1 maintainer
updateObject 1.16.0
Find/fix old serialized S4 instances
7 versions - Latest release: 5 months ago - 10.3 thousand downloads total - 1 maintainer
DelayedDataFrame 1.28.0
Delayed operation on DataFrame using standard DataFrame metaphor
7 versions - Latest release: 5 months ago - 1 dependent package - 18.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
terraTCGAdata 1.16.0
OpenAccess TCGA Data on Terra as MultiAssayExperiment
7 versions - Latest release: 4 months ago - 11.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
MetaboCoreUtils 1.20.1
Core Utils for Metabolomics Data
9 versions - Latest release: 5 months ago - 5 dependent packages - 144 thousand downloads total - 9 stars on GitHub - 1 maintainer
MGnifyR 1.8.0
R interface to EBI MGnify metagenomics resource
6 versions - Latest release: 4 months ago - 11.2 thousand downloads total - 23 stars on GitHub - 1 maintainer
biodb 1.20.0
Biodb, a Library and a Development Framework for Connecting to Chemical and Biological Databases
8 versions - Latest release: 5 months ago - 10 dependent packages - 23 thousand downloads total - 0 stars on gitlab.com - 1 maintainer
Top 7.0% on bioconductor.org
ProtGenerics 1.44.0
Generic infrastructure for Bioconductor mass spectrometry packages
7 versions - Latest release: 4 months ago - 20 dependent packages - 1.66 million downloads total - 8 stars on GitHub - 1 maintainer
SingleCellAlleleExperiment 1.8.0
S4 Class for Single Cell Data with Allele and Functional Levels for Immune Genes
7 versions - Latest release: 4 months ago - 10 thousand downloads total - 8 stars on GitHub - 1 maintainer
HoloFoodR 1.6.0
R interface to EBI HoloFood resource
4 versions - Latest release: 5 months ago - 7.93 thousand downloads total - 2 stars on GitHub - 1 maintainer
AnVILBilling 1.22.0
Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).
7 versions - Latest release: 5 months ago - 12.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 5.9% on bioconductor.org
systemPipeR 2.18.0
systemPipeR: A Multipurpose Workflow Management System for Reproducible Data Analysis
10 versions - Latest release: 5 months ago - 3 dependent packages - 301 thousand downloads total - 52 stars on GitHub - 1 maintainer
cBioPortalData 2.24.0
Exposes and Makes Available Data from the cBioPortal Web Resources
11 versions - Latest release: 5 months ago - 4 dependent packages - 49.3 thousand downloads total - 37 stars on GitHub - 1 maintainer
rRDP 1.44.0 removed
Interface to the RDP Classifier
6 versions - Latest release: 11 months ago - 22.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
mimager 1.36.0
mimager: The Microarray Imager
7 versions - Latest release: 4 months ago - 22.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
BiocCheck 1.48.1
Bioconductor-specific package checks
12 versions - Latest release: about 1 month ago - 6 dependent packages - 342 thousand downloads total - 10 stars on GitHub - 1 maintainer
fastRanges 1.0.0
Deterministic Multithreaded Genomic Interval Operations
1 version - Latest release: 5 months ago - 3.77 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 8.6% on bioconductor.org
AnnotationFilter 1.36.0
Facilities for Filtering Bioconductor Annotation Resources
7 versions - Latest release: 5 months ago - 19 dependent packages - 1.47 million downloads total - 5 stars on GitHub - 1 maintainer
VCFArray 1.28.0
Representing on-disk / remote VCF files as array-like objects
7 versions - Latest release: 5 months ago - 18.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
PSMatch 1.16.0
Handling and Managing Peptide Spectrum Matches
7 versions - Latest release: 4 months ago - 2 dependent packages - 122 thousand downloads total - 6 stars on GitHub - 1 maintainer
MsBackendMgf 1.20.1
Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files
8 versions - Latest release: 2 months ago - 3 dependent packages - 59.5 thousand downloads total - 5 stars on GitHub - 2 maintainers
Top 3.6% on bioconductor.org
Icens 1.84.0
NPMLE for Censored and Truncated Data
7 versions - Latest release: 5 months ago - 1 dependent package - 155 thousand downloads total - 1 maintainer
Top 9.4% on bioconductor.org
RTCA 1.64.0
Open-source toolkit to analyse data from xCELLigence System (RTCA)
7 versions - Latest release: 5 months ago - 37.8 thousand downloads total - 1 maintainer
Related Keywords