bioconductor.org "single-cell" keyword
View the packages on the bioconductor.org package registry that are tagged with the "single-cell" keyword.
sccomp 2.0.0
Tests differences in cell-type proportion for single-cell data, robust to outliers5 versions - Latest release: 3 months ago - 7.66 thousand downloads total - 107 stars on GitHub - 1 maintainer
switchde 1.34.0
Switch-like differential expression across single-cell trajectories5 versions - Latest release: 2 months ago - 14.6 thousand downloads total - 20 stars on GitHub - 1 maintainer
cytomapper 1.20.0
Visualization of highly multiplexed imaging data in R5 versions - Latest release: 3 months ago - 3 dependent packages - 24.3 thousand downloads total - 32 stars on GitHub - 1 maintainer
tidytof 1.2.0
Analyze High-dimensional Cytometry Data Using Tidy Data Principles2 versions - Latest release: 2 months ago - 2.04 thousand downloads total - 19 stars on GitHub - 1 maintainer
Top 7.7% on bioconductor.org
6 versions - Latest release: 2 months ago - 63.9 thousand downloads total - 103 stars on GitHub - 1 maintainer
Nebulosa 1.18.0
Single-Cell Data Visualisation Using Kernel Gene-Weighted Density Estimation6 versions - Latest release: 2 months ago - 63.9 thousand downloads total - 103 stars on GitHub - 1 maintainer
ChromSCape 1.17.0
Analysis of single-cell epigenomics datasets with a Shiny App5 versions - Latest release: 2 months ago - 7.92 thousand downloads total - 14 stars on GitHub - 1 maintainer
Top 6.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 53.5 thousand downloads total - 29 stars on GitHub - 1 maintainer
M3Drop 1.34.0
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq5 versions - Latest release: 3 months ago - 1 dependent package - 53.5 thousand downloads total - 29 stars on GitHub - 1 maintainer
CiteFuse 1.20.0
CiteFuse: multi-modal analysis of CITE-seq data5 versions - Latest release: 3 months ago - 1 dependent package - 11.2 thousand downloads total - 25 stars on GitHub - 1 maintainer
escheR 1.8.0
Unified multi-dimensional visualizations with Gestalt principles6 versions - Latest release: 3 months ago - 2 dependent packages - 5.95 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
5 versions - Latest release: 2 months ago - 8 dependent packages - 46.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
iSEE 2.20.0
Interactive SummarizedExperiment Explorer5 versions - Latest release: 2 months ago - 8 dependent packages - 46.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
scruff 1.26.0
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)5 versions - Latest release: 3 months ago - 11.9 thousand downloads total - 8 stars on GitHub - 1 maintainer
cardelino 1.10.0
Clone Identification from Single Cell Data5 versions - Latest release: 2 months ago - 7.36 thousand downloads total - 62 stars on GitHub - 1 maintainer
imcRtools 1.14.0
Methods for imaging mass cytometry data analysis5 versions - Latest release: 3 months ago - 1 dependent package - 14.5 thousand downloads total - 26 stars on GitHub - 1 maintainer
scMET 1.10.0
Bayesian modelling of cell-to-cell DNA methylation heterogeneity5 versions - Latest release: 3 months ago - 4.97 thousand downloads total - 18 stars on GitHub - 1 maintainer
Top 6.1% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 98.6 thousand downloads total - 194 stars on GitHub - 1 maintainer
scDblFinder 1.22.0
scDblFinder6 versions - Latest release: 3 months ago - 1 dependent package - 98.6 thousand downloads total - 194 stars on GitHub - 1 maintainer
scp 1.18.0
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis5 versions - Latest release: 3 months ago - 11.5 thousand downloads total - 26 stars on GitHub - 1 maintainer
Statial 1.10.0
A package to identify changes in cell state relative to spatial associations8 versions - Latest release: 3 months ago - 5.67 thousand downloads total - 5 stars on GitHub - 1 maintainer
scMerge 1.24.0
scMerge: Merging multiple batches of scRNA-seq data5 versions - Latest release: 3 months ago - 2 dependent packages - 33.9 thousand downloads total - 67 stars on GitHub - 1 maintainer
BgeeDB 2.34.0
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities...6 versions - Latest release: 2 months ago - 2 dependent packages - 23.7 thousand downloads total - 16 stars on GitHub - 4 maintainers
BASiCS 2.20.0
Bayesian Analysis of Single-Cell Sequencing data5 versions - Latest release: 3 months ago - 2 dependent packages - 23.9 thousand downloads total - 83 stars on GitHub - 1 maintainer
CuratedAtlasQueryR 1.6.0
Queries the Human Cell Atlas5 versions - Latest release: 3 months ago - 4.42 thousand downloads total - 90 stars on GitHub - 1 maintainer
netSmooth 1.28.0
Network smoothing for scRNAseq5 versions - Latest release: 3 months ago - 1 dependent package - 12.9 thousand downloads total - 27 stars on GitHub - 1 maintainer
EWCE 1.16.0
Expression Weighted Celltype Enrichment6 versions - Latest release: 2 months ago - 15.6 thousand downloads total - 53 stars on GitHub - 1 maintainer
scHiCcompare 1.0.0
Differential Analysis of Single-cell Hi-C Data1 version - Latest release: 3 months ago - 1.02 thousand downloads total - 0 stars on GitHub - 1 maintainer
Related Keywords
Software
24
SingleCell
21
GeneExpression
14
RNASeq
10
Sequencing
10
Transcriptomics
9
Normalization
7
DifferentialExpression
7
ImmunoOncology
7
r
7
Visualization
7
bioinformatics
6
Clustering
6
Preprocessing
5
DimensionReduction
4
Spatial
4
scrna-seq
4
single-cell-rna-seq
3
rstats
3
GeneSetEnrichment
3
QualityControl
3
FeatureExtraction
3
human-cell-atlas
3
Transcription
3
DataImport
3
gene-expression
3
Regression
3
Bayesian
3
shiny
2
ShinyApps
2
bayesian
2
Proteomics
2
rna-seq
2
Microarray
2
Epigenetics
2
visualization
2
CellBasedAssays
2
Classification
2
BatchEffect
2
FlowCytometry
2
ATACSeq
2
genomics
2
MultipleComparison
2
OneChannel
2
Genetics
2
tidyverse
2
transcriptomics
2
bioconductor
1
somatic-mutations
1
imc
1
spatial
1
Coverage
1
MassSpectrometry
1
doublets
1
DNAMethylation
1
DifferentialMethylation
1
GeneRegulation
1
methylation-analysis
1
bayesian-inference
1
hierarchical-models
1
heterogeneity
1
generalised-linear-models
1
schi-c
1
chromatin
1
HiC
1
deconvolution
1
mRNAMicroarray
1
FunctionalGenomics
1
BiomedicalInformatics
1
Network
1
GraphAndNetwork
1
singlecellexperiment
1
hdf5
1
duckdb
1
database
1
Infrastructure
1
AssayDomain
1
rcpparmadillo
1
rcpp
1
bioconductor-package
1
CellBiology
1
enrichment-analysis
1
GO
1
software
1
proteomics
1
mass-spectrometry
1
Pathways
1
MethylSeq
1
cytof
1
DifferentialPeakCalling
1
differential-proportion
1
ChIPSeq
1
Annotation
1
microbiome
1
single-cell-multiomics
1
single-cell-analysis
1
multilevel
1
proportions
1
r-package
1
random-effects
1