bioconductor.org "single-cell" keyword
ChromSCape 1.22.0
Analysis of single-cell epigenomics datasets with a Shiny App7 versions - Latest release: 5 months ago - 28.9 thousand downloads total - 15 stars on GitHub - 1 maintainer
EWCE 1.20.0
Expression Weighted Celltype Enrichment9 versions - Latest release: 5 months ago - 38.7 thousand downloads total - 60 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
7 versions - Latest release: 5 months ago - 8 dependent packages - 82.2 thousand downloads total - 231 stars on GitHub - 1 maintainer
iSEE 2.24.0
Interactive SummarizedExperiment Explorer7 versions - Latest release: 5 months ago - 8 dependent packages - 82.2 thousand downloads total - 231 stars on GitHub - 1 maintainer
Top 6.1% on bioconductor.org
12 versions - Latest release: 2 days ago - 1 dependent package - 266 thousand downloads total - 274 stars on GitHub - 1 maintainer
scDblFinder 1.26.9
scDblFinder12 versions - Latest release: 2 days ago - 1 dependent package - 266 thousand downloads total - 274 stars on GitHub - 1 maintainer
sccomp 2.4.0
Differential Composition and Variability Analysis for Single-Cell Data7 versions - Latest release: 5 months ago - 25.8 thousand downloads total - 134 stars on GitHub - 1 maintainer
cardelino 1.14.0
Clone Identification from Single Cell Data7 versions - Latest release: 5 months ago - 22.8 thousand downloads total - 67 stars on GitHub - 1 maintainer
scMerge 1.28.0
scMerge: Merging multiple batches of scRNA-seq data7 versions - Latest release: 6 months ago - 2 dependent packages - 72 stars on GitHub - 1 maintainer
Statial 1.14.0
A package to identify changes in cell state relative to spatial associations11 versions - Latest release: 5 months ago - 19.7 thousand downloads total - 6 stars on GitHub - 1 maintainer
imcRtools 1.18.1
Methods for imaging mass cytometry data analysis8 versions - Latest release: 4 months ago - 1 dependent package - 37.4 thousand downloads total - 33 stars on GitHub - 1 maintainer
switchde 1.38.0
Switch-like differential expression across single-cell trajectories7 versions - Latest release: 5 months ago - 29.3 thousand downloads total - 22 stars on GitHub - 1 maintainer
scLANE 1.2.0
Model Gene Expression Dynamics with Spline-Based NB GLMs, GEEs, & GLMMs4 versions - Latest release: 6 months ago - 5.49 thousand downloads total - 17 stars on GitHub - 1 maintainer
scp 1.22.0
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis7 versions - Latest release: 5 months ago - 31.5 thousand downloads total - 33 stars on GitHub - 1 maintainer
scruff 1.30.0
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)8 versions - Latest release: 5 months ago - 22.8 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 7.7% on bioconductor.org
9 versions - Latest release: 5 months ago - 98.1 thousand downloads total - 116 stars on GitHub - 1 maintainer
Nebulosa 1.22.0
Single-Cell Data Visualisation Using Kernel Gene-Weighted Density Estimation9 versions - Latest release: 5 months ago - 98.1 thousand downloads total - 116 stars on GitHub - 1 maintainer
netSmooth 1.32.0
Network smoothing for scRNAseq7 versions - Latest release: 6 months ago - 1 dependent package - 22.6 thousand downloads total - 30 stars on GitHub - 1 maintainer
Top 6.9% on bioconductor.org
7 versions - Latest release: 5 months ago - 1 dependent package - 80.1 thousand downloads total - 33 stars on GitHub - 1 maintainer
M3Drop 1.38.0
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq7 versions - Latest release: 5 months ago - 1 dependent package - 80.1 thousand downloads total - 33 stars on GitHub - 1 maintainer
tidytof 1.6.0
Analyze High-dimensional Cytometry Data Using Tidy Data Principles4 versions - Latest release: 5 months ago - 3.42 thousand downloads total - 20 stars on GitHub - 1 maintainer
CuratedAtlasQueryR 1.10.0
Queries the Human Cell Atlas7 versions - Latest release: 6 months ago - 10.2 thousand downloads total - 93 stars on GitHub - 1 maintainer
BASiCS 2.24.0
Bayesian Analysis of Single-Cell Sequencing data7 versions - Latest release: 6 months ago - 2 dependent packages - 42.4 thousand downloads total - 88 stars on GitHub - 1 maintainer
BgeeDB 2.38.1
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities...8 versions - Latest release: 5 months ago - 2 dependent packages - 33.5 thousand downloads total - 16 stars on GitHub - 4 maintainers
cytomapper 1.24.0
Visualization of highly multiplexed imaging data in R7 versions - Latest release: 6 months ago - 3 dependent packages - 50.6 thousand downloads total - 37 stars on GitHub - 1 maintainer
escheR 1.12.0
Unified multi-dimensional visualizations with Gestalt principles8 versions - Latest release: 5 months ago - 2 dependent packages - 20.6 thousand downloads total - 8 stars on GitHub - 1 maintainer
CiteFuse 1.24.0
CiteFuse: multi-modal analysis of CITE-seq data7 versions - Latest release: 5 months ago - 1 dependent package - 25.6 thousand downloads total - 25 stars on GitHub - 1 maintainer
scHiCcompare 1.4.0
Differential Analysis of Single-cell Hi-C Data3 versions - Latest release: 6 months ago - 9.69 thousand downloads total - 0 stars on GitHub - 1 maintainer
scMET 1.14.0
Bayesian modelling of cell-to-cell DNA methylation heterogeneity7 versions - Latest release: 5 months ago - 16.6 thousand downloads total - 18 stars on GitHub - 1 maintainer
Related Keywords
Software
25
SingleCell
22
GeneExpression
15
Sequencing
11
RNASeq
11
Transcriptomics
10
Visualization
8
DifferentialExpression
8
Clustering
7
ImmunoOncology
7
r
7
Normalization
7
bioinformatics
6
Preprocessing
5
scrna-seq
5
DimensionReduction
4
GeneSetEnrichment
4
Spatial
4
Regression
4
rstats
3
gene-expression
3
transcriptomics
3
genomics
3
QualityControl
3
Bayesian
3
DataImport
3
Transcription
3
FeatureExtraction
3
human-cell-atlas
3
single-cell-rna-seq
3
MultipleComparison
2
Epigenetics
2
Classification
2
BatchEffect
2
FlowCytometry
2
ATACSeq
2
rna-seq
2
visualization
2
CellBasedAssays
2
tidyverse
2
Proteomics
2
bayesian
2
ShinyApps
2
Genetics
2
shiny
2
OneChannel
2
Microarray
2
bioimaging
1
TwoChannel
1
somatic-mutations
1
gibbs-sampling
1
clonal-clustering
1
ExomeSeq
1
enrichment-analysis
1
GO
1
rcpparmadillo
1
rcpp
1
bioconductor-package
1
CellBiology
1
data-science
1
cytometry
1
hacktoberfest
1
gui
1
feature-extraction
1
dimension-reduction
1
clustering
1
GUI
1
unwanted-variation
1
random-effects
1
r-package
1
proportions
1
multilevel
1
microbiome
1
differential-proportion
1
cytof
1
composition
1
batch-correction
1
Metagenomics
1
spatial-omics
1
multidimensional
1
singlecellexperiment
1
hdf5
1
duckdb
1
database
1
Infrastructure
1
AssayDomain
1
doublets
1
spatial-analysis
1
imaging-mass-cytometry
1
MethylSeq
1
DifferentialPeakCalling
1
ChIPSeq
1
Annotation
1
umi
1
WorkflowStep
1
Technology
1
Alignment
1
trajectory-inference
1
rna-velocity
1
pseudotime
1