Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bioinformatics" keyword
310 0.1.0
A example Python package1 version - Latest release: almost 2 years ago - 54 dependent repositories - 106 downloads last month - 21 stars on GitHub - 1 maintainer
aaindex 1.1.2
A lightweight Python software package for accessing the data in the various AAIndex databases, wh...10 versions - Latest release: 6 months ago - 3 dependent packages - 1 dependent repositories - 297 downloads last month - 7 stars on GitHub - 1 maintainer
ab12phylo 0.5.21b0
Integrated pipeline for ML phylogenetic inference from ABI trace and FASTA data8 versions - Latest release: almost 3 years ago - 1 dependent repositories - 83 downloads last month - 3 stars on GitHub - 1 maintainer
abpytools 0.3.2
Python package for antibody analysis11 versions - Latest release: over 5 years ago - 1 dependent repositories - 127 downloads last month - 23 stars on GitHub - 1 maintainer
abyssal-pytorch 0.0.5
Abyssal - Pytorch4 versions - Latest release: over 1 year ago - 56 downloads last month - 6 stars on GitHub - 1 maintainer
acclimatise 1.2.0
Acclimatise is a Python library and command-line utility for parsing the help output of a command...41 versions - Latest release: over 3 years ago - 348 downloads last month - 14 stars on GitHub - 1 maintainer
accuri2fcs 0.1.1
Convert Accuri format flow cytometry files to standard .fcs2 versions - Latest release: over 9 years ago - 2 dependent repositories - 34 downloads last month - 1 maintainer
aced-submission 0.0.7
Populate ACED commons from FHIR resources26 versions - Latest release: 8 months ago - 201 downloads last month - 3 maintainers
acidoseq 1.3.7
Studying Acidobacteria reads10 versions - Latest release: over 5 years ago - 1 dependent repositories - 48 downloads last month - 0 stars on GitHub - 1 maintainer
aclust 0.1.3 💰
streaming agglomerative clustering3 versions - Latest release: over 10 years ago - 5 dependent repositories - 25 downloads last month - 13 stars on GitHub - 1 maintainer
acpipe-acjson 0.1.17
acpipe_acjson is the python3 acjson base library. acjson - assay coordinate json - is a file form...16 versions - Latest release: over 4 years ago - 1 dependent repositories - 137 downloads last month - 1 stars on GitLab.com - 1 maintainer
adapt-diagnostics 1.6.0
Tools to design guides for diagnostics6 versions - Latest release: over 1 year ago - 1 dependent repositories - 103 downloads last month - 24 stars on GitHub - 2 maintainers
affbio 0.0.4
Affinity Propagation for structures of biomolecules. First developed for clustering of DNA origam...5 versions - Latest release: over 7 years ago - 2 dependent repositories - 33 downloads last month - 1 maintainer
afplot 0.2.1
Plot allele frequencies in VCF files3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 60 downloads last month - 11 stars on GitHub - 1 maintainer
agct 0.1.0.dev1
Another Genome Conversion Tool: Python frontend to Rust chainfile crate2 versions - Latest release: 4 months ago - 1 dependent package - 2.32 thousand downloads last month - 2 stars on GitHub - 3 maintainers
ageas 0.0.1a8
AutoML-based Genetic regulatory Element extrAction System6 versions - Latest release: over 1 year ago - 58 downloads last month - 4 stars on GitHub - 1 maintainer
agfusion 1.4.1
Python package to annotate and visualize gene fusions.25 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 190 downloads last month - 54 stars on GitHub - 1 maintainer
ahab-lib 1.0.1
Python CLI library for interacting with ahab cloud API and Kubernetes systems.1 version - Latest release: 22 days ago - 148 downloads last month - 0 stars on GitHub - 1 maintainer
aims-immune 0.9.2
A software for the analysis of immune repertoires16 versions - Latest release: 2 months ago - 88 downloads last month - 9 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
7 versions - Latest release: 9 months ago - 7 dependent packages - 11 dependent repositories - 3.03 thousand downloads last month - 34 stars on GitHub - 3 maintainers
airr 1.5.0
AIRR Community Data Representation Standard reference library for antibody and TCR sequencing data.7 versions - Latest release: 9 months ago - 7 dependent packages - 11 dependent repositories - 3.03 thousand downloads last month - 34 stars on GitHub - 3 maintainers
airrship 0.1.5
Simulation of B cell receptor repertoires6 versions - Latest release: about 1 year ago - 65 downloads last month - 6 stars on GitHub - 2 maintainers
akrup 1.0.5
Ancestral Karyotype Reconstruction Universal Pipeline6 versions - Latest release: 9 months ago - 55 downloads last month - 2 stars on GitHub - 1 maintainer
albatradis 1.0.1
Comparitive transposon mutagenesis experiment analysis2 versions - Latest release: over 4 years ago - 1 dependent repositories - 23 downloads last month - 7 stars on GitHub - 1 maintainer
albion-similog 0.3.7
Compute a consensus dataseries with FAMSA algorithm.12 versions - Latest release: almost 2 years ago - 98 downloads last month - 126 stars on GitHub - 1 maintainer
aldy 4.3.1
A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymo...19 versions - Latest release: over 1 year ago - 1 dependent repositories - 201 downloads last month - 51 stars on GitHub - 1 maintainer
aleph 1.3.1
ALEPH is a bioinformatics tool for structure interpretation and generation of fragment-based libr...17 versions - Latest release: over 3 years ago - 1 dependent repositories - 151 downloads last month - 1 maintainer
alfie 1.0
alignment free identification of edna1 version - Latest release: about 4 years ago - 1 dependent repositories - 19 downloads last month - 7 stars on GitHub - 1 maintainer
alfpy 1.0.6
Alignment-free package to compare DNA/RNA/protein sequences (bioinformatics).4 versions - Latest release: about 6 years ago - 2 dependent packages - 1 dependent repositories - 93 downloads last month - 21 stars on GitHub - 1 maintainer
algpred2 1.4
A tool to predict allergenic proteins and mapping of IgE epitopes5 versions - Latest release: 9 months ago - 60 downloads last month - 2 stars on GitHub - 2 maintainers
alignmentrs 0.9.0
Quickly read and manipulate multiple sequence alignments in Python17 versions - Latest release: over 5 years ago - 1 dependent repositories - 122 downloads last month - 1 stars on GitHub - 1 maintainer
alignqc 2.0.5
Python and R based tool for assessing the quality of alignments2 versions - Latest release: over 6 years ago - 1 dependent repositories - 36 downloads last month - 45 stars on GitHub - 1 maintainer
allcools 1.1.0
Toolkit for single-cell DNA methylome and multiomic data analysis.41 versions - Latest release: about 1 month ago - 1 dependent repositories - 324 downloads last month - 33 stars on GitHub - 1 maintainer
Top 3.2% on pypi.org
80 versions - Latest release: 6 months ago - 21 dependent packages - 40 dependent repositories - 3.27 thousand downloads last month - 327 stars on GitHub - 1 maintainer
allensdk 2.16.2
core libraries for the allensdk.80 versions - Latest release: 6 months ago - 21 dependent packages - 40 dependent repositories - 3.27 thousand downloads last month - 327 stars on GitHub - 1 maintainer
allfreqs 0.3.0
Calculate allele frequency from a sequence multialignment.3 versions - Latest release: about 4 years ago - 1 dependent repositories - 59 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
27 versions - Latest release: about 2 months ago - 4 dependent packages - 3 dependent repositories - 1.17 thousand downloads last month - 23 stars on GitHub - 2 maintainers
alphabase 1.2.3
An infrastructure Python package of the AlphaX ecosystem27 versions - Latest release: about 2 months ago - 4 dependent packages - 3 dependent repositories - 1.17 thousand downloads last month - 23 stars on GitHub - 2 maintainers
alphabetsoup 0.5.3
tile phylogenetic space with subtrees7 versions - Latest release: almost 4 years ago - 43 downloads last month - 0 stars on GitHub - 1 maintainer
alphapept 0.5.3
A modular, python-based framework for mass spectrometry.18 versions - Latest release: about 1 month ago - 366 downloads last month - 137 stars on GitHub - 1 maintainer
alpharaw 0.4.5
An open-source Python package to unify raw MS data access and storage.12 versions - Latest release: about 1 month ago - 3 dependent packages - 1 dependent repositories - 1.08 thousand downloads last month - 11 stars on GitHub - 2 maintainers
alphastats 0.6.5
An open-source Python package for automated and scalable statistical analysis of mass spectrometr...31 versions - Latest release: 9 months ago - 1 dependent repositories - 446 downloads last month - 41 stars on GitHub - 1 maintainer
Top 7.9% on pypi.org
20 versions - Latest release: 10 months ago - 3 dependent packages - 3 dependent repositories - 2.07 thousand downloads last month - 69 stars on GitHub - 2 maintainers
alphatims 1.0.8
A Python package to index Bruker TimsTOF raw data for fast and easy accession and visualization20 versions - Latest release: 10 months ago - 3 dependent packages - 3 dependent repositories - 2.07 thousand downloads last month - 69 stars on GitHub - 2 maintainers
alphaviz 1.1.15
A interactive Dashboard to explore mass spectrometry data.15 versions - Latest release: almost 2 years ago - 1 dependent repositories - 86 downloads last month - 27 stars on GitHub - 1 maintainer
altamisa 0.2.9
Implementation of ISA-tools data model and ISA-TAB2 versions - Latest release: about 3 years ago - 5 dependent repositories - 858 downloads last month - 5 stars on GitHub - 2 maintainers
altanalyze 2.1.3
User Friendly Application for Comprehensive Transcriptome Analysis38 versions - Latest release: about 5 years ago - 285 downloads last month - 91 stars on GitHub - 1 maintainer
ambio 0.5.2
A lightweight Bioinformatics library23 versions - Latest release: about 3 years ago - 169 downloads last month - 0 stars on GitHub - 1 maintainer
amfpy-python 0.1.5
Absolute Molecule File library extension for python1 version - Latest release: 9 months ago - 21 downloads last month - 1 maintainer
aminoextract 0.3.1
AminoExtract is an application to extract aminoacid sequences from a fasta file based on a GFF.5 versions - Latest release: 8 months ago - 54 downloads last month - 1 stars on GitHub - 2 maintainers
ammolite 0.8.0
Visualize structure data from Biotite with PyMOL9 versions - Latest release: almost 2 years ago - 2 dependent repositories - 89 downloads last month - 16 stars on GitHub - 2 maintainers
amon-bio 1.0.4
Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins f...5 versions - Latest release: 4 months ago - 51 downloads last month - 17 stars on GitHub - 2 maintainers
amphipathic 1.0.11
This is a library to evaluate an aminoacid sequence and determine an amphipathic index for each a...25 versions - Latest release: almost 3 years ago - 2 dependent repositories - 207 downloads last month - 1 stars on GitHub - 1 maintainer
amplicon-coverage-inspector 1.4.20240116
Visualization of coverage for amplicon sequencing3 versions - Latest release: 4 months ago - 30 downloads last month - 2 stars on GitHub - 1 maintainer
ampligone 1.3.1
Ampligone is a tool which accurately removes primer sequences from FastQ NGS reads in an amplicon...9 versions - Latest release: about 2 months ago - 65 downloads last month - 8 stars on GitHub - 3 maintainers
anacore 3.1.0
Libraries for managing standard file formats and objects from NGS.11 versions - Latest release: 2 months ago - 1 dependent repositories - 105 downloads last month - 3 stars on GitHub - 1 maintainer
anadama2 0.10.0
AnADAMA2: Another Automated Data Analysis Management Application 221 versions - Latest release: over 1 year ago - 1 dependent package - 3 dependent repositories - 121 downloads last month - 1 maintainer
analysis-runner 3.0.0
Analysis runner to help make analysis results reproducible94 versions - Latest release: about 1 month ago - 3 dependent repositories - 1.19 thousand downloads last month - 2 stars on GitHub - 2 maintainers
analysis-runner-ms 0.9.10
Analysis runner to help make analysis results reproducible10 versions - Latest release: over 1 year ago - 1 dependent repositories - 29 downloads last month - 1 maintainer
aniclustermap 1.3.0
A tool for drawing ANI clustermap between all-vs-all microbial genomes5 versions - Latest release: 7 months ago - 1 dependent repositories - 69 downloads last month - 41 stars on GitHub - 1 maintainer
Top 1.7% on pypi.org
83 versions - Latest release: about 1 month ago - 389 dependent packages - 467 dependent repositories - 192 thousand downloads last month - 501 stars on GitHub - 3 maintainers
anndata 0.10.7
Annotated data.83 versions - Latest release: about 1 month ago - 389 dependent packages - 467 dependent repositories - 192 thousand downloads last month - 501 stars on GitHub - 3 maintainers
annofilt 0.0.8
Filter annotations from prokka3 versions - Latest release: over 3 years ago - 1 dependent repositories - 27 downloads last month - 3 stars on GitHub - 1 maintainer
antiberty-pytorch 0.0.1
Antiberty - Pytorch1 version - Latest release: about 1 year ago - 21 downloads last month - 22 stars on GitHub - 1 maintainer
antidb 2024.4.6
The simplest index-and-search engine for huge multiline text files. Focused primarily on bioinfor...6 versions - Latest release: about 1 month ago - 85 downloads last month - 0 stars on GitHub - 1 maintainer
apafea 0.0.9
visualizes genes functional enrichment9 versions - Latest release: almost 2 years ago - 55 downloads last month - 1 maintainer
aphylogeo 1.0.0
A phylogenetic and geographic analysis tool7 versions - Latest release: 6 months ago - 56 downloads last month - 9 stars on GitHub - 1 maintainer
apobec 0.6
scripts for mutations counting in deep sequencing data6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 46 downloads last month - 2 stars on GitHub - 1 maintainer
aprile 0.1.0
Adverse Polypharmacy Reaction Intelligent Learner and Explainer (APRILE) -- An explainable machin...1 version - Latest release: over 2 years ago - 1 dependent repositories - 29 downloads last month - 7 stars on GitHub - 1 maintainer
apybiomart 0.5.3
Async pythonic interface to Biomart.16 versions - Latest release: over 3 years ago - 2 dependent repositories - 165 downloads last month - 6 stars on GitHub - 1 maintainer
apyhgnc 0.2.6
Async pythonic interface to HGNC.9 versions - Latest release: over 4 years ago - 1 dependent repositories - 38 downloads last month - 1 stars on GitHub - 1 maintainer
arbow 0.6.0
Cultivate your MSA to get better trees15 versions - Latest release: about 4 years ago - 1 dependent repositories - 150 downloads last month - 1 maintainer
argnorm 0.3.0
Normalize antibiotic resistance genes (ARGs) results by using the ARO ontology (developed by CARD).7 versions - Latest release: 24 days ago - 1 dependent repositories - 48 downloads last month - 14 stars on GitHub - 3 maintainers
argparse2tool 0.4.9
Instrument for forming Galaxy XML and CWL tool descriptions from argparse arguments10 versions - Latest release: almost 4 years ago - 1 dependent repositories - 94 downloads last month - 26 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
53 versions - Latest release: over 3 years ago - 7 dependent repositories - 285 downloads last month - 151 stars on GitHub - 1 maintainer
ariba 2.14.6
ARIBA: Antibiotic Resistance Identification By Assembly53 versions - Latest release: over 3 years ago - 7 dependent repositories - 285 downloads last month - 151 stars on GitHub - 1 maintainer
arteria 1.1.4
Helper classes for the arteria project3 versions - Latest release: almost 2 years ago - 1 dependent repositories - 42 downloads last month - 2 maintainers
arv 0.9.2
A fast 23andMe raw genome file parser11 versions - Latest release: about 7 years ago - 221 downloads last month - 114 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
361 versions - Latest release: about 1 month ago - 5 dependent repositories - 1.96 thousand downloads last month - 364 stars on GitHub - 1 maintainer
arvados-cwl-runner 2.7.2
Arvados Common Workflow Language runner361 versions - Latest release: about 1 month ago - 5 dependent repositories - 1.96 thousand downloads last month - 364 stars on GitHub - 1 maintainer
arvados_fuse 2.7.2
Arvados FUSE driver503 versions - Latest release: about 1 month ago - 2 dependent repositories - 2.08 thousand downloads last month - 364 stars on GitHub - 1 maintainer
arvados-pam 2.0.4
Arvados PAM module32 versions - Latest release: almost 4 years ago - 136 downloads last month - 364 stars on GitHub - 1 maintainer
Top 5.5% on pypi.org
689 versions - Latest release: about 1 month ago - 11 dependent repositories - 7.61 thousand downloads last month - 364 stars on GitHub - 1 maintainer
arvados-python-client 2.7.2
Arvados client library689 versions - Latest release: about 1 month ago - 11 dependent repositories - 7.61 thousand downloads last month - 364 stars on GitHub - 1 maintainer
asari-metabolomics 1.13.1
LC-MS metabolomics data preprocessing62 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 469 downloads last month - 26 stars on GitHub - 1 maintainer
asdparser 0.4.2
A python parser for the ASD database19 versions - Latest release: 2 months ago - 141 downloads last month - 1 stars on GitHub - 1 maintainer
ataqc 0.2
ATAqC - quality control for ATAC-seq1 version - Latest release: over 6 years ago - 1 dependent repositories - 36 downloads last month - 17 stars on GitHub - 1 maintainer
Top 5.5% on pypi.org
31 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 848 downloads last month - 101 stars on GitHub - 1 maintainer
atomium 1.0.11 💰
A molecular modeller and file parser.31 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 848 downloads last month - 101 stars on GitHub - 1 maintainer
atropos 1.1.32
trim adapters from high-throughput sequencing reads62 versions - Latest release: 6 months ago - 3 dependent repositories - 327 downloads last month - 116 stars on GitHub - 1 maintainer
augmentext 0.1.7
Text augmentation library for NLP with a focus on biomedical applications.8 versions - Latest release: almost 3 years ago - 87 downloads last month - 1 maintainer
autofeather-dash 2.14.2 💰
A Python framework for building reactive web-apps. Developed by Plotly.4 versions - Latest release: 5 months ago - 44 downloads last month - 20,586 stars on GitHub - 1 maintainer
autogdc 0.0.1
Automatic Genomic Data Commons processing for bioinformaticians1 version - Latest release: over 3 years ago - 16 downloads last month - 1 maintainer
automlsa2 0.9.0
Automated Multi-Locus Sequence Analysis tool17 versions - Latest release: over 1 year ago - 1 dependent repositories - 133 downloads last month - 5 stars on GitHub - 1 maintainer
autopacmen-paulocracy 0.6.2
The AutoPACMEN package9 versions - Latest release: 11 months ago - 100 downloads last month - 11 stars on GitHub - 1 maintainer
autopvs1-batch 2.0
A tool for batch run autoPVS11 version - Latest release: over 2 years ago - 1 dependent repositories - 14 downloads last month - 28 stars on GitHub - 1 maintainer
aviary-genome 0.9.1
aviary - metagenomics pipeline using long and short reads21 versions - Latest release: 7 days ago - 193 downloads last month - 68 stars on GitHub - 3 maintainers
azulejo 0.10.1
tile phylogenetic space with subtrees26 versions - Latest release: over 3 years ago - 1 dependent repositories - 237 downloads last month - 0 stars on GitHub - 1 maintainer
b2btools 3.0.7
bio2Byte software suite to predict protein biophysical properties from their amino-acid sequences47 versions - Latest release: 27 days ago - 402 downloads last month - 2 maintainers
b2constsites 0.3.3
Generate an appropriate data tag to add constant sites to your BEAST2 XML7 versions - Latest release: over 4 years ago - 1 dependent repositories - 66 downloads last month - 6 stars on GitHub - 1 maintainer
backtranslate 0.0.5
BackTranslate: Functions for reverse translation.4 versions - Latest release: over 8 years ago - 3 dependent repositories - 30 downloads last month - 2 stars on GitHub - 1 maintainer
bactopia 1.1.1
A Python package for working with Bactopia12 versions - Latest release: 21 days ago - 257 downloads last month - 6 stars on GitHub - 1 maintainer
badlon 0.1.3
A bioinf tool for analyzing pan-genome and other features based on synteny blocks4 versions - Latest release: about 1 year ago - 44 downloads last month - 0 stars on GitHub - 1 maintainer
bakta 1.9.3
Bakta: rapid & standardized annotation of bacterial genomes, MAGs & plasmids39 versions - Latest release: 2 months ago - 1 dependent repositories - 511 downloads last month - 383 stars on GitHub - 1 maintainer
bambu-qsar 0.0.18
bambu (bioassays model builder) is CLI tool to build QSAR models based on PubChem BioAssays datasets13 versions - Latest release: 12 months ago - 1 dependent repositories - 67 downloads last month - 3 stars on GitHub - 1 maintainer
bambu-server 0.0.2
bambu-server: model provisiong tool for Bambu2 versions - Latest release: almost 2 years ago - 8 downloads last month - 1 maintainer
bamplot 0.9.0
bamplot python package1 version - Latest release: almost 8 years ago - 1 dependent repositories - 27 downloads last month - 0 stars on GitHub - 1 maintainer
bamread 0.0.16
Read bam files quickly into dataframes in Python15 versions - Latest release: about 1 year ago - 5 dependent packages - 2 dependent repositories - 684 downloads last month - 12 stars on GitHub - 1 maintainer
bam-readgroup-to-json 0.1
convert each readgroup id to a json file from a BAM24 versions - Latest release: 8 months ago - 1 dependent repositories - 109 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
python
353
genomics
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biology
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ngs
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sequencing
113
machine-learning
84
workflow
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pipeline
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protein
74
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74
science
74
computational-biology
68
dna
66
metagenomics
65
genetics
61
deep-learning
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sequence
53
analysis
43
hacktoberfest
43
genome
43
python3
42
alignment
41
phylogenetics
40
rna-seq
40
fasta
38
transcriptomics
38
single-cell
37
microbiome
35
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35
data-science
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NGS
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workflow-engine
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proteomics
32
bioinformatics-pipeline
31
usegalaxy
28
evolution
28
protein-structure
27
machine learning
27
systems-biology
26
chemistry
26
transcriptome
26
vcf
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sequence-alignment
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