Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bioinformatics" keyword
sigprofilertopography 1.0.90
SigProfilerTopography provides topography analyses for substitutions, dinucleotides and indels fo...267 versions - Latest release: 3 days ago - 1 dependent repositories - 2.38 thousand downloads last month - 15 stars on GitHub - 2 maintainers
Top 8.1% on pypi.org
20 versions - Latest release: 4 days ago - 7 dependent packages - 1 dependent repositories - 2.39 thousand downloads last month - 629 stars on GitHub - 1 maintainer
pycirclize 1.5.0
Circular visualization in Python20 versions - Latest release: 4 days ago - 7 dependent packages - 1 dependent repositories - 2.39 thousand downloads last month - 629 stars on GitHub - 1 maintainer
wgse-ng 1.0.0a3
Whole Genome Sequencing data manipulation tool11 versions - Latest release: 4 days ago - 1.31 thousand downloads last month - 2 stars on GitHub - 1 maintainer
mobspy 2.4.4
A Query-Based Language for Chemical Reaction Networks26 versions - Latest release: 4 days ago - 1 dependent repositories - 461 downloads last month - 21 stars on GitHub - 3 maintainers
scboolseq 2.1.0
scBoolSeq: Linking scRNA-Seq Statistics and Boolean Dynamics.9 versions - Latest release: 4 days ago - 1 dependent repositories - 121 downloads last month - 4 stars on GitHub - 1 maintainer
bioprot 0.2.0
A package for DNA, RNA and protein sequence manipulation1 version - Latest release: 4 days ago - 0 stars on GitHub
Top 2.0% on pypi.org
36 versions - Latest release: 4 days ago - 7 dependent packages - 74 dependent repositories - 9.13 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
multiqc 1.22.1
Create aggregate bioinformatics analysis reports across many samples and tools36 versions - Latest release: 4 days ago - 7 dependent packages - 74 dependent repositories - 9.13 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
genomehubs 2.8.8
GenomeHubs150 versions - Latest release: 4 days ago - 1 dependent repositories - 1.24 thousand downloads last month - 13 stars on GitHub - 1 maintainer
dajin2 0.4.6
One-step genotyping tools for targeted long-read sequencing46 versions - Latest release: 4 days ago - 405 downloads last month - 4 stars on GitHub - 1 maintainer
genebe 0.0.18
GeneBe Client: A user-friendly system for annotating genetic variants15 versions - Latest release: 4 days ago - 330 downloads last month - 1 stars on GitHub - 1 maintainer
gemmapy 1.0.1
a Python Wrapper for the Gemma API4 versions - Latest release: 4 days ago - 134 downloads last month - 5 stars on GitHub - 2 maintainers
pydiopt 0.1.2
pyDIOPT - Python Wrapper for DIOPT3 versions - Latest release: 5 days ago - 285 downloads last month - 0 stars on GitHub - 1 maintainer
cpg-utils 5.0.10
Library of convenience functions specific to the CPG102 versions - Latest release: 5 days ago - 3 dependent repositories - 4.07 thousand downloads last month - 0 stars on GitHub - 2 maintainers
cpg-workflows 1.24.4
CPG workflows for Hail Batch106 versions - Latest release: 5 days ago - 1 dependent repositories - 3.83 thousand downloads last month - 0 stars on GitHub - 2 maintainers
pycomplexheatmap 1.7.4 💰
A python package to plot complex heatmap45 versions - Latest release: 5 days ago - 1.35 thousand downloads last month - 235 stars on GitHub - 1 maintainer
sequence-align 0.1.1
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms in Rust wit...3 versions - Latest release: 5 days ago - 1 dependent package - 3.04 thousand downloads last month - 58 stars on GitHub - 2 maintainers
Top 5.9% on pypi.org
196 versions - Latest release: 5 days ago - 1 dependent package - 21 dependent repositories - 4.18 thousand downloads last month - 117 stars on GitHub - 6 maintainers
ontobio 2.8.25
Library for working with OBO Library Ontologies and associations196 versions - Latest release: 5 days ago - 1 dependent package - 21 dependent repositories - 4.18 thousand downloads last month - 117 stars on GitHub - 6 maintainers
flatgfa 0.1.3
efficient processing of pangenomes in Graphical Fragment Assembly (GFA) format2 versions - Latest release: 5 days ago - 402 downloads last month - 24 stars on GitHub - 1 maintainer
kitsune 1.3.5
A toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phyl...23 versions - Latest release: 5 days ago - 1 dependent repositories - 182 downloads last month - 8 stars on GitHub - 1 maintainer
effidict 0.0.7
Fast Python package providing enhanced dictionary-like data structures with advanced caching capa...7 versions - Latest release: 5 days ago - 380 downloads last month - 12 stars on GitHub - 1 maintainer
pxblat 1.2.1
A native python binding for blat suite26 versions - Latest release: 5 days ago - 677 downloads last month - 10 stars on GitHub - 1 maintainer
trailblazer 21.5.15
Trailblazer is a tool to manage and track state of analyses268 versions - Latest release: 6 days ago - 1 dependent package - 1 dependent repositories - 3.57 thousand downloads last month - 5 stars on GitHub - 5 maintainers
rnalysis 3.12.0 💰
RNAlysis is an analysis software for RNA sequencing data. RNAlysis can help to filter, visualize,...39 versions - Latest release: 6 days ago - 1 dependent repositories - 710 downloads last month - 121 stars on GitHub - 1 maintainer
pytantan 0.1.1
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and ...2 versions - Latest release: 6 days ago - 2.5 thousand downloads last month - 0 stars on GitHub - 1 maintainer
multiqc-sgr 1.21.4
Create aggregate bioinformatics analysis reports across many samples and tools8 versions - Latest release: 6 days ago - 258 downloads last month - 0 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
46 versions - Latest release: 7 days ago - 5 dependent packages - 12 dependent repositories - 17.7 thousand downloads last month - 930 stars on GitHub - 3 maintainers
pytdc 0.4.14
Therapeutics Data Commons46 versions - Latest release: 7 days ago - 5 dependent packages - 12 dependent repositories - 17.7 thousand downloads last month - 930 stars on GitHub - 3 maintainers
blasttools 0.1.16
Commands for turning blast queries into pandas dataframes.6 versions - Latest release: 7 days ago - 1.63 thousand downloads last month - 0 stars on GitHub - 1 maintainer
wgse-ng-3rd-party 1.0.0
Whole Genome Sequencing data manipulation tool2 versions - Latest release: 7 days ago - 274 downloads last month - 3 stars on GitHub - 1 maintainer
Top 9.0% on pypi.org
130 versions - Latest release: 7 days ago - 1 dependent package - 4 dependent repositories - 1.89 thousand downloads last month - 35 stars on GitHub - 5 maintainers
hicstuff 3.2.3
General purpose stuff to generate and handle Hi-C data in its simplest form.130 versions - Latest release: 7 days ago - 1 dependent package - 4 dependent repositories - 1.89 thousand downloads last month - 35 stars on GitHub - 5 maintainers
sccross 1.0.4
Single cell multi-omics cross modal generation, multi-omics simulation and perturbation5 versions - Latest release: 7 days ago - 116 downloads last month - 0 stars on GitHub - 1 maintainer
aviary-genome 0.9.1
aviary - metagenomics pipeline using long and short reads21 versions - Latest release: 8 days ago - 193 downloads last month - 68 stars on GitHub - 3 maintainers
pybiotk 1.2.8
pybiotk: A python toolkit for bioinformatics analysis.18 versions - Latest release: 8 days ago - 104 downloads last month - 0 stars on GitHub - 1 maintainer
kmerdb 0.8.2 💰
Yet another corretion to the 'yet another correction to just a k-mer counter...'37 versions - Latest release: 8 days ago - 1 dependent repositories - 255 downloads last month - 12 stars on GitHub - 1 maintainer
treedata 0.0.1
anndata with trees1 version - Latest release: 8 days ago - 237 downloads last month - 1 stars on GitHub - 1 maintainer
rapids-singlecell 0.10.3
running single cell analysis on Nvidia GPUs26 versions - Latest release: 8 days ago - 1 dependent package - 1.32 thousand downloads last month - 83 stars on GitHub - 1 maintainer
Top 9.7% on pypi.org
344 versions - Latest release: 8 days ago - 3 dependent repositories - 3.23 thousand downloads last month - 17 stars on GitHub - 5 maintainers
resolwe-bio 56.0.0
Bioinformatics pipelines for the Resolwe platform344 versions - Latest release: 8 days ago - 3 dependent repositories - 3.23 thousand downloads last month - 17 stars on GitHub - 5 maintainers
treetop 2024.5.13.dev1
TreeTOP1 version - Latest release: 9 days ago - 0 stars on GitHub - 1 maintainer
pyranges1 1.0.1
GenomicRanges for Python.6 versions - Latest release: 9 days ago - 1 dependent package - 610 downloads last month - 5 stars on GitHub - 2 maintainers
bioat 0.11.3
Bioinformatic toolkit with python92 versions - Latest release: 9 days ago - 561 downloads last month - 2 stars on GitHub - 1 maintainer
singlem 0.17.0
Novelty-inclusive microbial community profiling of shotgun metagenomes17 versions - Latest release: 10 days ago - 1 dependent repositories - 134 downloads last month - 103 stars on GitHub - 2 maintainers
Top 5.1% on pypi.org
110 versions - Latest release: 10 days ago - 1 dependent package - 3 dependent repositories - 1.75 thousand downloads last month - 702 stars on GitHub - 1 maintainer
jcvi 1.4.12
Python utility libraries on genome assembly, annotation and comparative genomics110 versions - Latest release: 10 days ago - 1 dependent package - 3 dependent repositories - 1.75 thousand downloads last month - 702 stars on GitHub - 1 maintainer
extra-cli 0.2.0
a project management tool for reproducible, portable, and streamlined bioinformatics analysis1 version - Latest release: 10 days ago - 1 maintainer
Top 8.9% on pypi.org
51 versions - Latest release: 11 days ago - 1 dependent package - 1 dependent repositories - 1.13 thousand downloads last month - 146 stars on GitHub - 3 maintainers
sigprofilerextractor 1.1.24
Extracts mutational signatures from mutational catalogues51 versions - Latest release: 11 days ago - 1 dependent package - 1 dependent repositories - 1.13 thousand downloads last month - 146 stars on GitHub - 3 maintainers
mini3di 0.1.1
A NumPy port of the foldseek code for encoding structures to 3di.2 versions - Latest release: 11 days ago - 155 downloads last month - 12 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
120 versions - Latest release: 11 days ago - 56 dependent packages - 56 dependent repositories - 15.5 thousand downloads last month - 389 stars on GitHub - 2 maintainers
pyranges 0.1.1
GenomicRanges for Python.120 versions - Latest release: 11 days ago - 56 dependent packages - 56 dependent repositories - 15.5 thousand downloads last month - 389 stars on GitHub - 2 maintainers
Top 6.1% on pypi.org
25 versions - Latest release: 11 days ago - 2 dependent packages - 8 dependent repositories - 1.26 thousand downloads last month - 33 stars on GitHub - 2 maintainers
pysces 1.2.1
The Python Simulator for Cellular Systems - simulation and analysis tools for modelling biologica...25 versions - Latest release: 11 days ago - 2 dependent packages - 8 dependent repositories - 1.26 thousand downloads last month - 33 stars on GitHub - 2 maintainers
phanatic 2.2.4
Python package to run de novo bacteriophage assembly container.5 versions - Latest release: 11 days ago - 17 downloads last month - 0 stars on GitHub - 1 maintainer
hydra-rbp 0.1.21.34
A hybrid ensemble classifier for RNA-binding proteins utilizing protein-protein interaction conte...9 versions - Latest release: 12 days ago - 55 downloads last month - 5 stars on GitHub - 1 maintainer
Top 9.0% on pypi.org
120 versions - Latest release: 12 days ago - 1 dependent repositories - 22 thousand downloads last month - 3 stars on GitHub - 1 maintainer
gencove 2.16.3
Gencove API and CLI tool120 versions - Latest release: 12 days ago - 1 dependent repositories - 22 thousand downloads last month - 3 stars on GitHub - 1 maintainer
readfish 2024.2.0
ONT adaptive sampling10 versions - Latest release: 12 days ago - 1 dependent repositories - 285 downloads last month - 161 stars on GitHub - 3 maintainers
protkit 0.3.0
A unified toolkit for structural protein engineering.8 versions - Latest release: 12 days ago - 189 downloads last month - 28 stars on GitHub - 1 maintainer
Top 4.3% on pypi.org
48 versions - Latest release: 12 days ago - 1 dependent package - 4 dependent repositories - 8.96 thousand downloads last month - 217 stars on GitHub - 4 maintainers
nf-core 2.14.1
Helper tools for use with nf-core Nextflow pipelines.48 versions - Latest release: 12 days ago - 1 dependent package - 4 dependent repositories - 8.96 thousand downloads last month - 217 stars on GitHub - 4 maintainers
pyopal 0.6.0
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.16 versions - Latest release: 13 days ago - 1 dependent package - 1 dependent repositories - 4.16 thousand downloads last month - 7 stars on GitHub - 1 maintainer
molgraph 0.6.7
Graph Neural Networks for Molecular Machine Learning38 versions - Latest release: 13 days ago - 1 dependent repositories - 600 downloads last month - 44 stars on GitHub - 1 maintainer
oligo-designer-toolsuite-ai-filters 0.0.2
AI plug-ins for the Oligo Designer Toolsuite package3 versions - Latest release: 13 days ago - 399 downloads last month - 12 stars on GitHub - 1 maintainer
biosmoother 1.5.1
On-the-fly processing and visualization of interactome data15 versions - Latest release: 13 days ago - 103 downloads last month - 4 stars on GitHub - 1 maintainer
libbiosmoother 1.5.1
On-the-fly processing of interactome data16 versions - Latest release: 13 days ago - 1 dependent package - 985 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.1% on pypi.org
34 versions - Latest release: 14 days ago - 1 dependent package - 70 dependent repositories - 10.4 thousand downloads last month - 131 stars on GitHub - 1 maintainer
snakefmt 0.10.2
The uncompromising Snakemake code formatter34 versions - Latest release: 14 days ago - 1 dependent package - 70 dependent repositories - 10.4 thousand downloads last month - 131 stars on GitHub - 1 maintainer
metamist 6.10.2
Python API for interacting with the Sample API system25 versions - Latest release: 14 days ago - 1 dependent repositories - 1.66 thousand downloads last month - 0 stars on GitHub - 1 maintainer
contextualized-ml 0.2.8
A statistical machine learning toolbox for estimating models, distributions, and functions with s...10 versions - Latest release: 14 days ago - 164 downloads last month - 59 stars on GitHub - 1 maintainer
galaxy-tool-shed 24.0.2
Galaxy auth framework and implementations4 versions - Latest release: 14 days ago - 102 downloads last month - 1,315 stars on GitHub - 1 maintainer
galaxy-test-driver 24.0.2
Galaxy test driver18 versions - Latest release: 14 days ago - 1 dependent package - 1 dependent repositories - 185 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-apps 24.0.2
Galaxy web apps15 versions - Latest release: 14 days ago - 2 dependent packages - 1 dependent repositories - 233 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.4% on pypi.org
19 versions - Latest release: 14 days ago - 4 dependent packages - 13 dependent repositories - 450 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-app 24.0.2
Galaxy application (backend)19 versions - Latest release: 14 days ago - 4 dependent packages - 13 dependent repositories - 450 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
18 versions - Latest release: 14 days ago - 5 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-stack 24.0.2
Galaxy web stack abstraction18 versions - Latest release: 14 days ago - 5 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
19 versions - Latest release: 14 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-framework 24.0.2
Galaxy web framework19 versions - Latest release: 14 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-api 24.0.2
Galaxy API tests18 versions - Latest release: 14 days ago - 1 dependent repositories - 186 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.1% on pypi.org
20 versions - Latest release: 14 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-job-execution 24.0.2
Galaxy job execution runtime utilities20 versions - Latest release: 14 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.2% on pypi.org
19 versions - Latest release: 14 days ago - 2 dependent packages - 10 dependent repositories - 396 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-auth 24.0.2
Galaxy auth framework and implementations19 versions - Latest release: 14 days ago - 2 dependent packages - 10 dependent repositories - 396 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 6.1% on pypi.org
18 versions - Latest release: 14 days ago - 2 dependent packages - 9 dependent repositories - 272 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-base 24.0.2
Galaxy testing utilities18 versions - Latest release: 14 days ago - 2 dependent packages - 9 dependent repositories - 272 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-tours 24.0.2
Galaxy tours backend framework15 versions - Latest release: 14 days ago - 1 dependent package - 362 downloads last month - 1,315 stars on GitHub - 1 maintainer
galaxy-selenium 24.0.2
Galaxy Selenium interaction framework19 versions - Latest release: 14 days ago - 1 dependent repositories - 222 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.9% on pypi.org
24 versions - Latest release: 14 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-data 24.0.2
Galaxy datatype framework and datatypes24 versions - Latest release: 14 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 1.6% on pypi.org
60 versions - Latest release: 14 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-tool-util 24.0.2
Galaxy tool and tool dependency utilities60 versions - Latest release: 14 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-schema 24.0.2
Galaxy auth framework and implementations4 versions - Latest release: 14 days ago - 111 downloads last month - 1,315 stars on GitHub - 1 maintainer
Top 3.6% on pypi.org
25 versions - Latest release: 14 days ago - 5 dependent packages - 13 dependent repositories - 824 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-objectstore 24.0.2
Galaxy objectstore framework and plugins25 versions - Latest release: 14 days ago - 5 dependent packages - 13 dependent repositories - 824 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-navigation 24.0.2
Galaxy client DOM navigation framework15 versions - Latest release: 14 days ago - 2 dependent packages - 417 downloads last month - 1,315 stars on GitHub - 1 maintainer
Top 3.8% on pypi.org
22 versions - Latest release: 14 days ago - 3 dependent packages - 10 dependent repositories - 665 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-job-metrics 24.0.2
Galaxy job metrics22 versions - Latest release: 14 days ago - 3 dependent packages - 10 dependent repositories - 665 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.4% on pypi.org
16 versions - Latest release: 14 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-files 24.0.2
Galaxy file source framework and default plugins16 versions - Latest release: 14 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 6.1% on pypi.org
16 versions - Latest release: 14 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-config 24.0.2
Galaxy configuration16 versions - Latest release: 14 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 1.9% on pypi.org
36 versions - Latest release: 14 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-util 24.0.2
Galaxy generic utilities36 versions - Latest release: 14 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
marsilea 0.3.6
Declarative creation of composable visualization9 versions - Latest release: 14 days ago - 1 dependent package - 1 dependent repositories - 314 downloads last month - 40 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
21 versions - Latest release: 14 days ago - 5 dependent packages - 5 dependent repositories - 2.2 thousand downloads last month - 94 stars on GitHub - 1 maintainer
cogent3 2024.5.7a1
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems ...21 versions - Latest release: 14 days ago - 5 dependent packages - 5 dependent repositories - 2.2 thousand downloads last month - 94 stars on GitHub - 1 maintainer
omicverse 1.5.9
OmicVerse: A single pipeline for exploring the entire transcriptome universe32 versions - Latest release: 14 days ago - 1 dependent repositories - 974 downloads last month - 133 stars on GitHub - 1 maintainer
tadrep 0.9.2
TaDRep: Targeted Detection and Reconstruction of Plasmids4 versions - Latest release: 14 days ago - 1 dependent repositories - 105 downloads last month - 19 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
42 versions - Latest release: 15 days ago - 15 dependent repositories - 11.3 thousand downloads last month - 257 stars on GitHub - 2 maintainers
dsub 0.4.11
A command-line tool that makes it easy to submit and run batch scripts in the cloud42 versions - Latest release: 15 days ago - 15 dependent repositories - 11.3 thousand downloads last month - 257 stars on GitHub - 2 maintainers
Top 9.6% on pypi.org
38 versions - Latest release: 15 days ago - 2 dependent packages - 1 dependent repositories - 527 downloads last month - 51 stars on GitHub - 1 maintainer
cell2cell 0.7.4
TBD38 versions - Latest release: 15 days ago - 2 dependent packages - 1 dependent repositories - 527 downloads last month - 51 stars on GitHub - 1 maintainer
Top 6.7% on pypi.org
12 versions - Latest release: 15 days ago - 1 dependent package - 3 dependent repositories - 769 downloads last month - 511 stars on GitHub - 3 maintainers
sniffles 2.3.3
A fast structural variation caller for long-read sequencing data12 versions - Latest release: 15 days ago - 1 dependent package - 3 dependent repositories - 769 downloads last month - 511 stars on GitHub - 3 maintainers
pyfamsa 0.4.0
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...8 versions - Latest release: 15 days ago - 3 dependent packages - 2.44 thousand downloads last month - 21 stars on GitHub - 1 maintainer
sagepy 0.2.8
Proteomics search & quantification so fast that it feels like magic10 versions - Latest release: 15 days ago - 1 dependent package - 73 downloads last month - 192 stars on GitHub - 1 maintainer
openst 0.1.2
The computational pipeline for the Open-ST method.10 versions - Latest release: 15 days ago - 637 downloads last month - 25 stars on GitHub - 2 maintainers
scoring-matrices 0.2.0
Dependency free, Cython-compatible scoring matrices to use with biological sequences.3 versions - Latest release: 15 days ago - 3 dependent packages - 5.6 thousand downloads last month - 2 stars on GitHub - 1 maintainer
sc-supertree 2024.5.6
Spectral Cluster Supertree3 versions - Latest release: 15 days ago - 1 dependent package - 101 downloads last month - 5 stars on GitHub - 1 maintainer
biodem 0.6.0
Dual-extraction method for phenotypic prediction and functional gene mining of complex traits.2 versions - Latest release: 16 days ago - 16 downloads last month - 2 stars on GitHub - 1 maintainer
Top 6.7% on pypi.org
44 versions - Latest release: 17 days ago - 2 dependent packages - 6 dependent repositories - 3.08 thousand downloads last month - 91 stars on GitHub - 1 maintainer
snps 2.8.1
tools for reading, writing, merging, and remapping SNPs44 versions - Latest release: 17 days ago - 2 dependent packages - 6 dependent repositories - 3.08 thousand downloads last month - 91 stars on GitHub - 1 maintainer
phykit 1.19.4
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies65 versions - Latest release: 18 days ago - 1 dependent repositories - 1.06 thousand downloads last month - 46 stars on GitHub - 1 maintainer
Top 0.3% on pypi.org
178 versions - Latest release: 18 days ago - 426 dependent packages - 11,467 dependent repositories - 2.86 million downloads last month - 20,598 stars on GitHub - 5 maintainers
dash 2.17.0 💰
A Python framework for building reactive web-apps. Developed by Plotly.178 versions - Latest release: 18 days ago - 426 dependent packages - 11,467 dependent repositories - 2.86 million downloads last month - 20,598 stars on GitHub - 5 maintainers
Top 8.9% on pypi.org
38 versions - Latest release: 18 days ago - 2 dependent packages - 3 dependent repositories - 495 downloads last month - 25 stars on GitHub - 1 maintainer
seqlogo 5.29.9
Python port of the R Bioconductor `seqlogo` package38 versions - Latest release: 18 days ago - 2 dependent packages - 3 dependent repositories - 495 downloads last month - 25 stars on GitHub - 1 maintainer
sphae 1.3.3
Assembling pure culture phages from both Illumina and Nanopore sequencing technology7 versions - Latest release: 18 days ago - 299 downloads last month - 17 stars on GitHub - 1 maintainer
genet 0.15.1
GenET: Genome Editing Toolkit50 versions - Latest release: 19 days ago - 1 dependent repositories - 384 downloads last month - 11 stars on GitHub - 1 maintainer
Related Keywords
python
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genomics
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biology
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protein
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computational-biology
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dna
66
metagenomics
65
deep-learning
61
genetics
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sequence
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genome
43
analysis
43
hacktoberfest
43
python3
42
alignment
41
phylogenetics
40
rna-seq
40
fasta
38
transcriptomics
38
single-cell
37
microbiome
35
bioinformatics-tool
35
data-science
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NGS
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workflow-engine
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proteomics
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bioinformatics-pipeline
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usegalaxy
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machine learning
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sequence-alignment
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data-visualization
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microbial-genomics
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RNA-Seq
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sequence-analysis
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