Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bioinformatics" keyword
bedhost 0.2.0
A database server application that provides both a RESTful API and GUI for access to BED files an...4 versions - Latest release: 5 months ago - 65 downloads last month - 37,327 stars on GitHub - 2 maintainers
Top 0.3% on pypi.org
178 versions - Latest release: 18 days ago - 426 dependent packages - 11,467 dependent repositories - 2.86 million downloads last month - 20,598 stars on GitHub - 5 maintainers
dash 2.17.0 💰
A Python framework for building reactive web-apps. Developed by Plotly.178 versions - Latest release: 18 days ago - 426 dependent packages - 11,467 dependent repositories - 2.86 million downloads last month - 20,598 stars on GitHub - 5 maintainers
autofeather-dash 2.14.2 💰
A Python framework for building reactive web-apps. Developed by Plotly.4 versions - Latest release: 5 months ago - 44 downloads last month - 20,586 stars on GitHub - 1 maintainer
bio-pype 1.0.7 💰
Management and development framework for bioinformatics pipelines9 versions - Latest release: over 4 years ago - 64 downloads last month - 4,722 stars on GitHub - 1 maintainer
Top 0.6% on pypi.org
60 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 815 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
biopython 1.83
Freely available tools for computational molecular biology.60 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 815 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
mah51-biopython 1.1
Freely available tools for computational molecular biology.2 versions - Latest release: about 2 years ago - 1 dependent repositories - 32 downloads last month - 3,900 stars on GitHub - 1 maintainer
Top 1.2% on pypi.org
78 versions - Latest release: about 1 month ago - 416 dependent packages - 493 dependent repositories - 147 thousand downloads last month - 1,777 stars on GitHub - 3 maintainers
scanpy 1.10.1
Single-Cell Analysis in Python.78 versions - Latest release: about 1 month ago - 416 dependent packages - 493 dependent repositories - 147 thousand downloads last month - 1,777 stars on GitHub - 3 maintainers
combipyroc 0.1.1a0 removed 💰
Find the best combination of biomarkers in case-control experiment1 version - Latest release: about 1 year ago - 1,771 stars on GitHub
Top 4.6% on pypi.org
12 versions - Latest release: about 4 years ago - 5 dependent packages - 12 dependent repositories - 672 downloads last month - 1,728 stars on GitHub - 2 maintainers
diffxpy 0.7.4
Fast and scalable differential expression analysis on single-cell RNA-seq data12 versions - Latest release: about 4 years ago - 5 dependent packages - 12 dependent repositories - 672 downloads last month - 1,728 stars on GitHub - 2 maintainers
Top 2.1% on pypi.org
29 versions - Latest release: about 2 months ago - 27 dependent packages - 49 dependent repositories - 4.87 thousand downloads last month - 1,691 stars on GitHub - 1 maintainer
mappy 2.28
Minimap2 python binding29 versions - Latest release: about 2 months ago - 27 dependent packages - 49 dependent repositories - 4.87 thousand downloads last month - 1,691 stars on GitHub - 1 maintainer
Top 1.8% on pypi.org
15 versions - Latest release: 2 months ago - 17 dependent packages - 178 dependent repositories - 26.6 thousand downloads last month - 1,601 stars on GitHub - 3 maintainers
scispacy 0.5.4
A full SpaCy pipeline and models for scientific/biomedical documents.15 versions - Latest release: 2 months ago - 17 dependent packages - 178 dependent repositories - 26.6 thousand downloads last month - 1,601 stars on GitHub - 3 maintainers
v-tools 1.1.0
Various tools operating over VCF files2 versions - Latest release: over 4 years ago - 1 dependent repositories - 15 downloads last month - 1,564 stars on GitHub - 2 maintainers
quicksect 0.2.2
fast, simple interval intersection6 versions - Latest release: almost 5 years ago - 1 dependent package - 3 dependent repositories - 80 downloads last month - 1,564 stars on GitHub - 1 maintainer
msmetaenhancer 0.4.0
Repository for tool that adds more annotations (e.g. SMILES, InChI, CAS number) to MSP files (Pyt...6 versions - Latest release: 2 months ago - 1 dependent repositories - 57 downloads last month - 1,564 stars on GitHub - 1 maintainer
mgnify-pipelines-toolkit 0.1.2
Collection of scripts and tools for MGnify pipelines8 versions - Latest release: 25 days ago - 43 downloads last month - 1,561 stars on GitHub - 1 maintainer
Top 1.6% on pypi.org
60 versions - Latest release: 14 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-tool-util 24.0.2
Galaxy tool and tool dependency utilities60 versions - Latest release: 14 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 3.6% on pypi.org
25 versions - Latest release: 14 days ago - 5 dependent packages - 13 dependent repositories - 824 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-objectstore 24.0.2
Galaxy objectstore framework and plugins25 versions - Latest release: 14 days ago - 5 dependent packages - 13 dependent repositories - 824 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.1% on pypi.org
20 versions - Latest release: 14 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-job-execution 24.0.2
Galaxy job execution runtime utilities20 versions - Latest release: 14 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-api 24.0.2
Galaxy API tests18 versions - Latest release: 14 days ago - 1 dependent repositories - 186 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-apps 24.0.2
Galaxy web apps15 versions - Latest release: 14 days ago - 2 dependent packages - 1 dependent repositories - 233 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 6.1% on pypi.org
16 versions - Latest release: 14 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-config 24.0.2
Galaxy configuration16 versions - Latest release: 14 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.4% on pypi.org
19 versions - Latest release: 14 days ago - 4 dependent packages - 13 dependent repositories - 450 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-app 24.0.2
Galaxy application (backend)19 versions - Latest release: 14 days ago - 4 dependent packages - 13 dependent repositories - 450 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-selenium 22.1.1
Galaxy Selenium Tests3 versions - Latest release: over 1 year ago - 1 dependent repositories - 30 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
18 versions - Latest release: 14 days ago - 5 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-stack 24.0.2
Galaxy web stack abstraction18 versions - Latest release: 14 days ago - 5 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 1.9% on pypi.org
36 versions - Latest release: 14 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-util 24.0.2
Galaxy generic utilities36 versions - Latest release: 14 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 3.8% on pypi.org
22 versions - Latest release: 14 days ago - 3 dependent packages - 10 dependent repositories - 665 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-job-metrics 24.0.2
Galaxy job metrics22 versions - Latest release: 14 days ago - 3 dependent packages - 10 dependent repositories - 665 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-driver 24.0.2
Galaxy test driver18 versions - Latest release: 14 days ago - 1 dependent package - 1 dependent repositories - 185 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-selenium 24.0.2
Galaxy Selenium interaction framework19 versions - Latest release: 14 days ago - 1 dependent repositories - 222 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.4% on pypi.org
16 versions - Latest release: 14 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-files 24.0.2
Galaxy file source framework and default plugins16 versions - Latest release: 14 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-tours 24.0.2
Galaxy tours backend framework15 versions - Latest release: 14 days ago - 1 dependent package - 362 downloads last month - 1,315 stars on GitHub - 1 maintainer
Top 5.2% on pypi.org
19 versions - Latest release: 14 days ago - 2 dependent packages - 10 dependent repositories - 396 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-auth 24.0.2
Galaxy auth framework and implementations19 versions - Latest release: 14 days ago - 2 dependent packages - 10 dependent repositories - 396 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-authnz 19.9.0.dev0
Galaxy AuthNZ1 version - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 6.1% on pypi.org
18 versions - Latest release: 14 days ago - 2 dependent packages - 9 dependent repositories - 272 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-base 24.0.2
Galaxy testing utilities18 versions - Latest release: 14 days ago - 2 dependent packages - 9 dependent repositories - 272 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-tool-shed 24.0.2
Galaxy auth framework and implementations4 versions - Latest release: 14 days ago - 102 downloads last month - 1,315 stars on GitHub - 1 maintainer
galaxy-test-tools 19.9.0.dev2
Galaxy Test Tools`1 version - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.9% on pypi.org
24 versions - Latest release: 14 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-data 24.0.2
Galaxy datatype framework and datatypes24 versions - Latest release: 14 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-schema 24.0.2
Galaxy auth framework and implementations4 versions - Latest release: 14 days ago - 111 downloads last month - 1,315 stars on GitHub - 1 maintainer
galaxy-model-tools 19.9.0.dev2
Galaxy Model Tools`1 version - Latest release: over 2 years ago - 1 dependent repositories - 9 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
19 versions - Latest release: 14 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-framework 24.0.2
Galaxy web framework19 versions - Latest release: 14 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-navigation 24.0.2
Galaxy client DOM navigation framework15 versions - Latest release: 14 days ago - 2 dependent packages - 417 downloads last month - 1,315 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
6 versions - Latest release: over 1 year ago - 4 dependent packages - 13 dependent repositories - 2.96 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-containers 22.1.1
Galaxy Container Modeling and Interaction Abstractions6 versions - Latest release: over 1 year ago - 4 dependent packages - 13 dependent repositories - 2.96 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
senseppi 0.7.1
SENSE-PPI: Sequence-based EvolutioNary ScalE Protein-Protein Interaction prediction17 versions - Latest release: about 1 month ago - 77 downloads last month - 1,271 stars on GitHub - 1 maintainer
multiqc-msk 1.11.dev0
Create aggregate bioinformatics analysis reports across many samples and tools1 version - Latest release: about 3 years ago - 1 dependent repositories - 14 downloads last month - 1,162 stars on GitHub - 1 maintainer
Top 2.0% on pypi.org
36 versions - Latest release: 4 days ago - 7 dependent packages - 74 dependent repositories - 9.13 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
multiqc 1.22.1
Create aggregate bioinformatics analysis reports across many samples and tools36 versions - Latest release: 4 days ago - 7 dependent packages - 74 dependent repositories - 9.13 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
multiqc-jupyterlab-helper 1.12.1.dev0
Create aggregate bioinformatics analysis reports across many samples and tools2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 1,162 stars on GitHub - 1 maintainer
cromtool 1.4
Development tool for Cromwell5 versions - Latest release: about 8 years ago - 2 dependent repositories - 26 downloads last month - 960 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
47 versions - Latest release: 7 days ago - 5 dependent packages - 12 dependent repositories - 18.6 thousand downloads last month - 930 stars on GitHub - 3 maintainers
pytdc 0.4.14
Therapeutics Data Commons47 versions - Latest release: 7 days ago - 5 dependent packages - 12 dependent repositories - 18.6 thousand downloads last month - 930 stars on GitHub - 3 maintainers
Top 5.7% on pypi.org
30 versions - Latest release: 3 months ago - 1 dependent package - 3 dependent repositories - 1.21 thousand downloads last month - 927 stars on GitHub - 1 maintainer
graphein 1.7.6 💰
Protein & Interactomic Graph Construction for Machine Learning30 versions - Latest release: 3 months ago - 1 dependent package - 3 dependent repositories - 1.21 thousand downloads last month - 927 stars on GitHub - 1 maintainer
cpg-hail 0.2.90
Scalable library for exploring and analyzing genomic data.6 versions - Latest release: about 2 years ago - 1 dependent repositories - 36 downloads last month - 925 stars on GitHub - 2 maintainers
j11hail 99.2.58
Scalable library for exploring and analyzing genomic data.4 versions - Latest release: over 3 years ago - 1 dependent repositories - 47 downloads last month - 925 stars on GitHub - 2 maintainers
Top 2.4% on pypi.org
150 versions - Latest release: about 1 month ago - 10 dependent packages - 43 dependent repositories - 40.5 thousand downloads last month - 925 stars on GitHub - 2 maintainers
hail 0.2.130
Scalable library for exploring and analyzing genomic data.150 versions - Latest release: about 1 month ago - 10 dependent packages - 43 dependent repositories - 40.5 thousand downloads last month - 925 stars on GitHub - 2 maintainers
Top 7.0% on pypi.org
13 versions - Latest release: over 2 years ago - 2 dependent repositories - 3.51 thousand downloads last month - 918 stars on GitHub - 1 maintainer
deeppurpose 0.1.5
a Deep Learning Based Toolkit for Drug Discovery13 versions - Latest release: over 2 years ago - 2 dependent repositories - 3.51 thousand downloads last month - 918 stars on GitHub - 1 maintainer
Top 4.3% on pypi.org
25 versions - Latest release: 10 months ago - 3 dependent packages - 8 dependent repositories - 851 downloads last month - 886 stars on GitHub - 2 maintainers
ncbi-genome-download 0.3.3
Download genome files from the NCBI FTP server.25 versions - Latest release: 10 months ago - 3 dependent packages - 8 dependent repositories - 851 downloads last month - 886 stars on GitHub - 2 maintainers
Top 1.4% on pypi.org
25 versions - Latest release: about 2 months ago - 43 dependent packages - 166 dependent repositories - 7.58 thousand downloads last month - 842 stars on GitHub - 4 maintainers
scikit-bio 0.6.0
Data structures, algorithms and educational resources for bioinformatics.25 versions - Latest release: about 2 months ago - 43 dependent packages - 166 dependent repositories - 7.58 thousand downloads last month - 842 stars on GitHub - 4 maintainers
Top 5.7% on pypi.org
19 versions - Latest release: over 2 years ago - 1 dependent package - 34 dependent repositories - 238 downloads last month - 776 stars on GitHub - 3 maintainers
google-nucleus 0.6.0
A library for reading and writing genomics data.19 versions - Latest release: over 2 years ago - 1 dependent package - 34 dependent repositories - 238 downloads last month - 776 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
110 versions - Latest release: 11 days ago - 1 dependent package - 3 dependent repositories - 1.75 thousand downloads last month - 702 stars on GitHub - 1 maintainer
jcvi 1.4.12
Python utility libraries on genome assembly, annotation and comparative genomics110 versions - Latest release: 11 days ago - 1 dependent package - 3 dependent repositories - 1.75 thousand downloads last month - 702 stars on GitHub - 1 maintainer
Top 2.9% on pypi.org
17 versions - Latest release: over 1 year ago - 8 dependent packages - 29 dependent repositories - 18.4 thousand downloads last month - 685 stars on GitHub - 1 maintainer
dgllife 0.3.2
DGL-based package for Life Science17 versions - Latest release: over 1 year ago - 8 dependent packages - 29 dependent repositories - 18.4 thousand downloads last month - 685 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
20 versions - Latest release: about 2 years ago - 14 dependent packages - 51 dependent repositories - 65.5 thousand downloads last month - 683 stars on GitHub - 1 maintainer
biopandas 0.4.1
Machine Learning Library Extensions20 versions - Latest release: about 2 years ago - 14 dependent packages - 51 dependent repositories - 65.5 thousand downloads last month - 683 stars on GitHub - 1 maintainer
Top 3.4% on pypi.org
60 versions - Latest release: 2 months ago - 6 dependent packages - 36 dependent repositories - 2.33 thousand downloads last month - 645 stars on GitHub - 3 maintainers
deeptools 3.5.5
Useful tools for exploring deep sequencing data.60 versions - Latest release: 2 months ago - 6 dependent packages - 36 dependent repositories - 2.33 thousand downloads last month - 645 stars on GitHub - 3 maintainers
Top 8.1% on pypi.org
20 versions - Latest release: 4 days ago - 7 dependent packages - 1 dependent repositories - 2.39 thousand downloads last month - 629 stars on GitHub - 1 maintainer
pycirclize 1.5.0
Circular visualization in Python20 versions - Latest release: 4 days ago - 7 dependent packages - 1 dependent repositories - 2.39 thousand downloads last month - 629 stars on GitHub - 1 maintainer
Top 5.8% on pypi.org
33 versions - Latest release: 4 months ago - 25 dependent repositories - 2.77 thousand downloads last month - 612 stars on GitHub - 1 maintainer
plantcv 4.2.1
An image processing package for plant phenotyping.33 versions - Latest release: 4 months ago - 25 dependent repositories - 2.77 thousand downloads last month - 612 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
53 versions - Latest release: about 2 months ago - 18 dependent packages - 22 dependent repositories - 17 thousand downloads last month - 567 stars on GitHub - 2 maintainers
biotite 0.40.0
A comprehensive library for computational molecular biology53 versions - Latest release: about 2 months ago - 18 dependent packages - 22 dependent repositories - 17 thousand downloads last month - 567 stars on GitHub - 2 maintainers
Top 7.2% on pypi.org
5 versions - Latest release: over 4 years ago - 6 dependent repositories - 343 downloads last month - 566 stars on GitHub - 1 maintainer
grakel-dev 0.1a6
A scikit-learn compatible library for graph kernels5 versions - Latest release: over 4 years ago - 6 dependent repositories - 343 downloads last month - 566 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
5 versions - Latest release: 7 months ago - 6 dependent packages - 21 dependent repositories - 3.63 thousand downloads last month - 566 stars on GitHub - 1 maintainer
grakel 0.1.10
A scikit-learn compatible library for graph kernels5 versions - Latest release: 7 months ago - 6 dependent packages - 21 dependent repositories - 3.63 thousand downloads last month - 566 stars on GitHub - 1 maintainer
Top 1.1% on pypi.org
10 versions - Latest release: 4 months ago - 20 dependent packages - 166 dependent repositories - 116 thousand downloads last month - 564 stars on GitHub - 4 maintainers
dash-cytoscape 1.0.0 💰
A Component Library for Dash aimed at facilitating network visualization in Python, wrapped aroun...10 versions - Latest release: 4 months ago - 20 dependent packages - 166 dependent repositories - 116 thousand downloads last month - 564 stars on GitHub - 4 maintainers
rsnapsim 0.0.58
A package for mRNA sequence translation stochastic simulations48 versions - Latest release: almost 2 years ago - 1 dependent repositories - 408 downloads last month - 562 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
30 versions - Latest release: 7 months ago - 9 dependent packages - 19 dependent repositories - 2.41 thousand downloads last month - 546 stars on GitHub - 1 maintainer
dna-features-viewer 3.1.3
Plot features from DNA sequences (e.g. Genbank) with Python30 versions - Latest release: 7 months ago - 9 dependent packages - 19 dependent repositories - 2.41 thousand downloads last month - 546 stars on GitHub - 1 maintainer
Top 6.7% on pypi.org
12 versions - Latest release: 15 days ago - 1 dependent package - 3 dependent repositories - 769 downloads last month - 511 stars on GitHub - 3 maintainers
sniffles 2.3.3
A fast structural variation caller for long-read sequencing data12 versions - Latest release: 15 days ago - 1 dependent package - 3 dependent repositories - 769 downloads last month - 511 stars on GitHub - 3 maintainers
Top 7.4% on pypi.org
21 versions - Latest release: 27 days ago - 7 dependent packages - 1 dependent repositories - 9.73 thousand downloads last month - 508 stars on GitHub - 2 maintainers
pydeseq2 0.4.9
A python implementation of DESeq2.21 versions - Latest release: 27 days ago - 7 dependent packages - 1 dependent repositories - 9.73 thousand downloads last month - 508 stars on GitHub - 2 maintainers
Top 2.6% on pypi.org
71 versions - Latest release: about 2 years ago - 7 dependent packages - 63 dependent repositories - 5.6 thousand downloads last month - 508 stars on GitHub - 4 maintainers
dash-bio 1.0.2 💰
Dash components for bioinformatics71 versions - Latest release: about 2 years ago - 7 dependent packages - 63 dependent repositories - 5.6 thousand downloads last month - 508 stars on GitHub - 4 maintainers
Top 1.7% on pypi.org
83 versions - Latest release: about 1 month ago - 389 dependent packages - 467 dependent repositories - 192 thousand downloads last month - 501 stars on GitHub - 3 maintainers
anndata 0.10.7
Annotated data.83 versions - Latest release: about 1 month ago - 389 dependent packages - 467 dependent repositories - 192 thousand downloads last month - 501 stars on GitHub - 3 maintainers
Top 7.0% on pypi.org
28 versions - Latest release: 10 months ago - 1 dependent package - 2 dependent repositories - 381 downloads last month - 499 stars on GitHub - 1 maintainer
clinker 0.0.28
Gene cluster comparison figure generator28 versions - Latest release: 10 months ago - 1 dependent package - 2 dependent repositories - 381 downloads last month - 499 stars on GitHub - 1 maintainer
Top 1.3% on pypi.org
66 versions - Latest release: over 8 years ago - 20 dependent packages - 88 dependent repositories - 26.4 thousand downloads last month - 490 stars on GitHub - 1 maintainer
cutadapt 1.9.1
Adapter trimming and other preprocessing of high-throughput sequencing reads66 versions - Latest release: over 8 years ago - 20 dependent packages - 88 dependent repositories - 26.4 thousand downloads last month - 490 stars on GitHub - 1 maintainer
Top 2.0% on pypi.org
18 versions - Latest release: almost 3 years ago - 28 dependent packages - 61 dependent repositories - 149 thousand downloads last month - 484 stars on GitHub - 1 maintainer
edlib 1.3.9
Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.18 versions - Latest release: almost 3 years ago - 28 dependent packages - 61 dependent repositories - 149 thousand downloads last month - 484 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
18 versions - Latest release: 6 months ago - 1 dependent package - 5 dependent repositories - 6.61 thousand downloads last month - 481 stars on GitHub - 1 maintainer
redun 0.17.0
Yet another redundant workflow engine.18 versions - Latest release: 6 months ago - 1 dependent package - 5 dependent repositories - 6.61 thousand downloads last month - 481 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
26 versions - Latest release: 6 months ago - 1 dependent repositories - 293 downloads last month - 451 stars on GitHub - 1 maintainer
biocode 0.11.0
Bioinformatics code libraries and scripts26 versions - Latest release: 6 months ago - 1 dependent repositories - 293 downloads last month - 451 stars on GitHub - 1 maintainer
pamodelpy 0.0.2
Python framework for building and analysing protein allocation models21 versions - Latest release: 9 months ago - 166 downloads last month - 442 stars on GitHub - 1 maintainer
cobra-utils 0.3.1
TBD8 versions - Latest release: about 4 years ago - 1 dependent repositories - 68 downloads last month - 442 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
99 versions - Latest release: 7 months ago - 56 dependent packages - 240 dependent repositories - 13.3 thousand downloads last month - 442 stars on GitHub - 5 maintainers
cobra 0.29.0
COBRApy is a package for constraint-based modeling of metabolic networks.99 versions - Latest release: 7 months ago - 56 dependent packages - 240 dependent repositories - 13.3 thousand downloads last month - 442 stars on GitHub - 5 maintainers
Top 1.9% on pypi.org
88 versions - Latest release: 4 months ago - 76 dependent packages - 268 dependent repositories - 113 thousand downloads last month - 441 stars on GitHub - 1 maintainer
pyfaidx 0.8.1
pyfaidx: efficient pythonic random access to fasta subsequences88 versions - Latest release: 4 months ago - 76 dependent packages - 268 dependent repositories - 113 thousand downloads last month - 441 stars on GitHub - 1 maintainer
sourmash-plugin-branchwater 0.9.3
fast command-line extensions for sourmash7 versions - Latest release: 2 months ago - 26 downloads last month - 431 stars on GitHub - 1 maintainer
sourmash-plugin-containment-search 0.4.3
sourmash plugin for improved output of containment search for metagenomes6 versions - Latest release: 3 months ago - 46 downloads last month - 431 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
71 versions - Latest release: about 1 month ago - 15 dependent packages - 21 dependent repositories - 3.15 thousand downloads last month - 431 stars on GitHub - 3 maintainers
sourmash 4.8.8
tools for comparing biological sequences with k-mer sketches71 versions - Latest release: about 1 month ago - 15 dependent packages - 21 dependent repositories - 3.15 thousand downloads last month - 431 stars on GitHub - 3 maintainers
Top 7.4% on pypi.org
48 versions - Latest release: 28 days ago - 2 dependent repositories - 403 downloads last month - 430 stars on GitHub - 3 maintainers
gtdbtk 2.4.0
A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.48 versions - Latest release: 28 days ago - 2 dependent repositories - 403 downloads last month - 430 stars on GitHub - 3 maintainers
Top 2.0% on pypi.org
22 versions - Latest release: about 8 years ago - 12 dependent packages - 129 dependent repositories - 47.9 thousand downloads last month - 392 stars on GitHub - 1 maintainer
pyvcf 0.6.8
Variant Call Format (VCF) parser for Python22 versions - Latest release: about 8 years ago - 12 dependent packages - 129 dependent repositories - 47.9 thousand downloads last month - 392 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
120 versions - Latest release: 11 days ago - 56 dependent packages - 56 dependent repositories - 15.5 thousand downloads last month - 389 stars on GitHub - 2 maintainers
pyranges 0.1.1
GenomicRanges for Python.120 versions - Latest release: 11 days ago - 56 dependent packages - 56 dependent repositories - 15.5 thousand downloads last month - 389 stars on GitHub - 2 maintainers
Top 6.1% on pypi.org
24 versions - Latest release: 9 months ago - 6 dependent repositories - 521 downloads last month - 388 stars on GitHub - 1 maintainer
plip 2.3.0
PLIP - Fully automated protein-ligand interaction profiler24 versions - Latest release: 9 months ago - 6 dependent repositories - 521 downloads last month - 388 stars on GitHub - 1 maintainer
daric 0.2.20
DARIC, a computational framework to find quantitatively differential compartments from Hi-C data15 versions - Latest release: 4 months ago - 1 dependent repositories - 61 downloads last month - 384 stars on GitHub - 1 maintainer
bakta 1.9.3
Bakta: rapid & standardized annotation of bacterial genomes, MAGs & plasmids39 versions - Latest release: 2 months ago - 1 dependent repositories - 511 downloads last month - 383 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
361 versions - Latest release: about 1 month ago - 5 dependent repositories - 1.96 thousand downloads last month - 364 stars on GitHub - 1 maintainer
arvados-cwl-runner 2.7.2
Arvados Common Workflow Language runner361 versions - Latest release: about 1 month ago - 5 dependent repositories - 1.96 thousand downloads last month - 364 stars on GitHub - 1 maintainer
Top 5.5% on pypi.org
689 versions - Latest release: about 1 month ago - 11 dependent repositories - 7.61 thousand downloads last month - 364 stars on GitHub - 1 maintainer
arvados-python-client 2.7.2
Arvados client library689 versions - Latest release: about 1 month ago - 11 dependent repositories - 7.61 thousand downloads last month - 364 stars on GitHub - 1 maintainer
arvados_fuse 2.7.2
Arvados FUSE driver503 versions - Latest release: about 1 month ago - 2 dependent repositories - 2.08 thousand downloads last month - 364 stars on GitHub - 1 maintainer
crunchstat_summary 2.7.2
Arvados crunchstat-summary reads crunch log files and summarizes resource usage20 versions - Latest release: about 1 month ago - 184 downloads last month - 364 stars on GitHub - 1 maintainer
arvados-pam 2.0.4
Arvados PAM module32 versions - Latest release: almost 4 years ago - 136 downloads last month - 364 stars on GitHub - 1 maintainer
Top 4.0% on pypi.org
38 versions - Latest release: almost 2 years ago - 5 dependent packages - 14 dependent repositories - 6.98 thousand downloads last month - 358 stars on GitHub - 1 maintainer
pdb-tools 2.5.0
A swiss army knife for PDB files.38 versions - Latest release: almost 2 years ago - 5 dependent packages - 14 dependent repositories - 6.98 thousand downloads last month - 358 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
93 versions - Latest release: 4 months ago - 43 dependent packages - 99 dependent repositories - 62.7 thousand downloads last month - 357 stars on GitHub - 1 maintainer
cyvcf2 0.30.28 💰
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