Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "genomics" keyword

Top 0.6% on pypi.org
biopython 1.83
Freely available tools for computational molecular biology.
60 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 821 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
Top 1.9% on pypi.org
pyfaidx 0.8.1
pyfaidx: efficient pythonic random access to fasta subsequences
88 versions - Latest release: 4 months ago - 76 dependent packages - 268 dependent repositories - 113 thousand downloads last month - 441 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
cyvcf2 0.30.28 💰
fast vcf parsing with cython + htslib
93 versions - Latest release: 4 months ago - 43 dependent packages - 99 dependent repositories - 62.7 thousand downloads last month - 357 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
msprime 1.3.1
Simulate genealogical trees and genomic sequence data using population genetic models
58 versions - Latest release: 3 months ago - 16 dependent packages - 83 dependent repositories - 5.33 thousand downloads last month - 167 stars on GitHub - 2 maintainers
Top 2.1% on pypi.org
cooler 0.9.3
Sparse binary format for genomic interaction matrices.
46 versions - Latest release: 8 months ago - 22 dependent packages - 64 dependent repositories - 3.55 thousand downloads last month - 189 stars on GitHub - 2 maintainers
Top 5.5% on pypi.org
kipoiseq 0.7.1
kipoiseq: sequence-based data-loaders for Kipoi
21 versions - Latest release: over 2 years ago - 3 dependent packages - 62 dependent repositories - 1.9 thousand downloads last month - 76 stars on GitHub - 5 maintainers
Top 2.7% on pypi.org
pyranges 0.1.1
GenomicRanges for Python.
120 versions - Latest release: 12 days ago - 56 dependent packages - 56 dependent repositories - 15.5 thousand downloads last month - 389 stars on GitHub - 2 maintainers
Top 4.9% on pypi.org
pytabix 0.0.2
Python interface for tabix
2 versions - Latest release: about 9 years ago - 10 dependent packages - 54 dependent repositories - 1.26 thousand downloads last month - 82 stars on GitHub - 1 maintainer
Top 2.5% on pypi.org
tskit 0.5.6
The tree sequence toolkit.
36 versions - Latest release: 8 months ago - 16 dependent packages - 54 dependent repositories - 7.75 thousand downloads last month - 144 stars on GitHub - 2 maintainers
Top 2.4% on pypi.org
goatools 1.4.4
Python scripts to find enrichment of GO terms
50 versions - Latest release: about 1 month ago - 18 dependent packages - 51 dependent repositories - 6.32 thousand downloads last month - 727 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
mappy 2.28
Minimap2 python binding
29 versions - Latest release: about 2 months ago - 27 dependent packages - 49 dependent repositories - 4.87 thousand downloads last month - 1,691 stars on GitHub - 1 maintainer
Top 1.6% on pypi.org
galaxy-tool-util 24.0.2
Galaxy tool and tool dependency utilities
60 versions - Latest release: 15 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 2.4% on pypi.org
hail 0.2.130
Scalable library for exploring and analyzing genomic data.
150 versions - Latest release: about 1 month ago - 10 dependent packages - 43 dependent repositories - 40.5 thousand downloads last month - 925 stars on GitHub - 2 maintainers
Top 6.8% on pypi.org
pyfastaq 3.17.0
Script to manipulate FASTA and FASTQ files, plus API for developers
21 versions - Latest release: over 6 years ago - 42 dependent repositories - 646 downloads last month - 68 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
ncls 0.0.68
A fast interval tree-like implementation in C, wrapped for the Python ecosystem.
67 versions - Latest release: about 1 year ago - 15 dependent packages - 42 dependent repositories - 19.5 thousand downloads last month - 199 stars on GitHub - 1 maintainer
Top 3.4% on pypi.org
deeptools 3.5.5
Useful tools for exploring deep sequencing data.
60 versions - Latest release: 3 months ago - 6 dependent packages - 36 dependent repositories - 2.33 thousand downloads last month - 645 stars on GitHub - 3 maintainers
Top 3.0% on pypi.org
hgvs 1.5.4
HGVS Parser, Formatter, Mapper, Validator
73 versions - Latest release: over 1 year ago - 7 dependent packages - 34 dependent repositories - 35.2 thousand downloads last month - 232 stars on GitHub - 2 maintainers
Top 5.7% on pypi.org
google-nucleus 0.6.0
A library for reading and writing genomics data.
19 versions - Latest release: over 2 years ago - 1 dependent package - 34 dependent repositories - 238 downloads last month - 776 stars on GitHub - 3 maintainers
Top 5.6% on pypi.org
bioutils 0.5.8
miscellaneous simple bioinformatics utilities and lookup tables
59 versions - Latest release: 11 months ago - 6 dependent packages - 28 dependent repositories - 87.4 thousand downloads last month - 17 stars on GitHub - 2 maintainers
Top 6.9% on pypi.org
cogent 1.5.3
COmparative GENomics Toolkit
12 versions - Latest release: over 11 years ago - 24 dependent repositories - 197 downloads last month - 86 stars on GitHub - 4 maintainers
Top 4.2% on pypi.org
eutils 0.6.0
"Python interface to NCBI's eutilities API"
27 versions - Latest release: over 4 years ago - 6 dependent packages - 24 dependent repositories - 18.7 thousand downloads last month - 55 stars on GitHub - 2 maintainers
Top 1.9% on pypi.org
galaxy-util 24.0.2
Galaxy generic utilities
36 versions - Latest release: 15 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.6% on pypi.org
biocommons.seqrepo 0.6.9
Non-redundant, compressed, journalled, file-based storage for biological sequences
45 versions - Latest release: 3 months ago - 10 dependent packages - 21 dependent repositories - 65.3 thousand downloads last month - 38 stars on GitHub - 2 maintainers
Top 4.8% on pypi.org
sevenbridges-python 2.11.0
SBG API python client bindings
122 versions - Latest release: 2 months ago - 3 dependent packages - 15 dependent repositories - 82.6 thousand downloads last month - 45 stars on GitHub - 1 maintainer
Top 6.1% on pypi.org
pypairix 0.3.7
Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contain...
33 versions - Latest release: about 5 years ago - 5 dependent packages - 14 dependent repositories - 325 downloads last month - 81 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
galaxy-app 24.0.2
Galaxy application (backend)
19 versions - Latest release: 15 days ago - 4 dependent packages - 13 dependent repositories - 450 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 3.6% on pypi.org
galaxy-objectstore 24.0.2
Galaxy objectstore framework and plugins
25 versions - Latest release: 15 days ago - 5 dependent packages - 13 dependent repositories - 824 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 7.9% on pypi.org
pyrle 0.0.40
Numeric run length encoding for Python.
40 versions - Latest release: 21 days ago - 5 dependent packages - 13 dependent repositories - 2.39 thousand downloads last month - 16 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
galaxy-containers 22.1.1
Galaxy Container Modeling and Interaction Abstractions
6 versions - Latest release: over 1 year ago - 4 dependent packages - 13 dependent repositories - 2.96 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.9% on pypi.org
galaxy-data 24.0.2
Galaxy datatype framework and datatypes
24 versions - Latest release: 15 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 8.8% on pypi.org
pysnptools 0.5.11
PySnpTools
47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
Top 6.5% on pypi.org
harmony-pytorch 0.1.8
Pytorch implementation of Harmony algorithm on single-cell sequencing data integration
9 versions - Latest release: 5 months ago - 8 dependent packages - 12 dependent repositories - 928 downloads last month - 40 stars on GitHub - 2 maintainers
Top 4.7% on pypi.org
mudata 0.2.3
Multimodal omics analysis framework
9 versions - Latest release: 12 months ago - 24 dependent packages - 12 dependent repositories - 35.1 thousand downloads last month - 65 stars on GitHub - 1 maintainer
Top 5.5% on pypi.org
arvados-python-client 2.7.2
Arvados client library
689 versions - Latest release: about 1 month ago - 11 dependent repositories - 6.93 thousand downloads last month - 365 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
galaxy-web-framework 24.0.2
Galaxy web framework
19 versions - Latest release: 15 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.1% on pypi.org
galaxy-job-execution 24.0.2
Galaxy job execution runtime utilities
20 versions - Latest release: 15 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.3% on pypi.org
ga4gh.vrs 0.8.5
"GA4GH Variation Representation Specification (VRS) reference implementation (https://github.com/...
51 versions - Latest release: 7 months ago - 7 dependent packages - 10 dependent repositories - 5.35 thousand downloads last month - 46 stars on GitHub - 7 maintainers
ga4gh.vrsatile.pydantic 0.2.0
"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"
24 versions - Latest release: 8 months ago - 7 dependent packages - 10 dependent repositories - 189 downloads last month - 0 stars on GitHub - 3 maintainers
Top 3.8% on pypi.org
galaxy-job-metrics 24.0.2
Galaxy job metrics
22 versions - Latest release: 15 days ago - 3 dependent packages - 10 dependent repositories - 665 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.2% on pypi.org
galaxy-auth 24.0.2
Galaxy auth framework and implementations
19 versions - Latest release: 15 days ago - 2 dependent packages - 10 dependent repositories - 396 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
galaxy-web-stack 24.0.2
Galaxy web stack abstraction
18 versions - Latest release: 15 days ago - 5 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 3 maintainers
forward 0.1.0
Tool for gene-based phenomic experiments using cohorts.
1 version - Latest release: over 8 years ago - 9 dependent repositories - 253 downloads last month - 4 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
pybbi 0.4.0
Python bindings to the UCSC source for Big Binary Indexed (bigWig/bigBed) files.
14 versions - Latest release: about 1 month ago - 2 dependent packages - 9 dependent repositories - 1.83 thousand downloads last month - 26 stars on GitHub - 1 maintainer
Top 6.1% on pypi.org
galaxy-test-base 24.0.2
Galaxy testing utilities
18 versions - Latest release: 15 days ago - 2 dependent packages - 9 dependent repositories - 272 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.3% on pypi.org
ncbi-genome-download 0.3.3
Download genome files from the NCBI FTP server.
25 versions - Latest release: 10 months ago - 3 dependent packages - 8 dependent repositories - 851 downloads last month - 886 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
cgatcore 0.6.16
cgatcore : the Computational Genomics Analysis Toolkit
32 versions - Latest release: about 2 months ago - 2 dependent packages - 8 dependent repositories - 1.73 thousand downloads last month - 31 stars on GitHub - 2 maintainers
Top 5.3% on pypi.org
cooltools 0.7.0
Analysis tools for genomic interaction data stored in .cool format
14 versions - Latest release: 30 days ago - 3 dependent packages - 7 dependent repositories - 520 downloads last month - 120 stars on GitHub - 3 maintainers
Top 8.2% on pypi.org
fastlmm 0.6.8
Fast GWAS
52 versions - Latest release: 22 days ago - 1 dependent package - 7 dependent repositories - 680 downloads last month - 43 stars on GitHub - 4 maintainers
ga4gh-common 0.0.7
Common utilities for GA4GH packages
7 versions - Latest release: about 7 years ago - 7 dependent repositories - 111 downloads last month - 3 stars on GitHub - 5 maintainers
Top 7.1% on pypi.org
ariba 2.14.6
ARIBA: Antibiotic Resistance Identification By Assembly
53 versions - Latest release: over 3 years ago - 7 dependent repositories - 285 downloads last month - 151 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
peddy 0.4.8 💰
pleasingly pythonic pedigree manipulation
27 versions - Latest release: almost 3 years ago - 7 dependent repositories - 1.69 thousand downloads last month - 127 stars on GitHub - 1 maintainer
geonomics 1.4.1
A package for landscape genomic simulation
69 versions - Latest release: 23 days ago - 7 dependent repositories - 509 downloads last month - 9 stars on GitHub - 1 maintainer
gfapy 1.2.3
Library for handling data in the GFA1 and GFA2 formats
16 versions - Latest release: over 2 years ago - 6 dependent repositories - 297 downloads last month - 62 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
circlator 1.5.5
circlator: a tool to circularise genome assemblies
33 versions - Latest release: over 6 years ago - 6 dependent repositories - 145 downloads last month - 212 stars on GitHub - 1 maintainer
igv 0.10.0
Jupyter extension for embedding the genome visualation igv.js in a notebook
9 versions - Latest release: about 3 years ago - 6 dependent repositories - 94 downloads last month - 155 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
kipoi 0.8.6
Kipoi: model zoo for genomics
73 versions - Latest release: almost 2 years ago - 2 dependent packages - 6 dependent repositories - 2.01 thousand downloads last month - 229 stars on GitHub - 4 maintainers
Top 7.3% on pypi.org
aegea 4.4.1 💰
Amazon Web Services Operator Interface
208 versions - Latest release: 12 months ago - 6 dependent repositories - 6.68 thousand downloads last month - 68 stars on GitHub - 1 maintainer
Top 5.4% on pypi.org
galaxy-files 24.0.2
Galaxy file source framework and default plugins
16 versions - Latest release: 15 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 3.8% on pypi.org
bioframe 0.6.4
Operations and utilities for Genomic Interval Dataframes.
27 versions - Latest release: about 2 months ago - 8 dependent packages - 5 dependent repositories - 247 thousand downloads last month - 163 stars on GitHub - 3 maintainers
Top 9.7% on pypi.org
poppunk 2.4.0
PopPUNK (POPulation Partitioning Using Nucleotide Kmers)
23 versions - Latest release: about 3 years ago - 5 dependent repositories - 194 downloads last month - 76 stars on GitHub - 2 maintainers
Top 6.9% on pypi.org
cogent3 2024.5.7a1
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems ...
21 versions - Latest release: 15 days ago - 5 dependent packages - 5 dependent repositories - 1.72 thousand downloads last month - 95 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
iva 1.0.9
Iterative Virus Assembler
16 versions - Latest release: over 6 years ago - 5 dependent repositories - 86 downloads last month - 52 stars on GitHub - 1 maintainer
pyplink 1.3.7
Python module to read binary Plink files.
13 versions - Latest release: 3 months ago - 2 dependent packages - 5 dependent repositories - 507 downloads last month - 14 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
arvados-cwl-runner 2.7.2
Arvados Common Workflow Language runner
361 versions - Latest release: about 1 month ago - 5 dependent repositories - 1.56 thousand downloads last month - 365 stars on GitHub - 1 maintainer
axial 0.2.3
Interactive Visualizations for High Dimensional Genomics Data
5 versions - Latest release: over 5 years ago - 5 dependent repositories - 85 downloads last month - 6 stars on GitHub - 1 maintainer
ssw 0.4.1
Smith-Waterman Sequence Aligner
2 versions - Latest release: about 5 years ago - 2 dependent packages - 5 dependent repositories - 61 downloads last month - 34 stars on GitHub - 1 maintainer
Top 3.8% on pypi.org
umi-tools 1.1.4
umi_tools: Tools for UMI analyses
39 versions - Latest release: about 1 year ago - 4 dependent packages - 5 dependent repositories - 2.15 thousand downloads last month - 461 stars on GitHub - 2 maintainers
blockify 0.2.2
Fast and optimal genome segmentation with Bayesian blocks
5 versions - Latest release: over 3 years ago - 5 dependent repositories - 72 downloads last month - 1 stars on GitHub - 1 maintainer
Top 9.0% on pypi.org
hicstuff 3.2.3
General purpose stuff to generate and handle Hi-C data in its simplest form.
130 versions - Latest release: 8 days ago - 1 dependent package - 4 dependent repositories - 1.89 thousand downloads last month - 35 stars on GitHub - 5 maintainers
Top 9.0% on pypi.org
concise 0.6.9
CONCISE (COnvolutional Neural for CIS-regulatory Elements)
25 versions - Latest release: about 4 years ago - 1 dependent package - 4 dependent repositories - 563 downloads last month - 32 stars on GitHub - 2 maintainers
cosmos-wfm 2.13.11
Workflow Management System
229 versions - Latest release: over 3 years ago - 4 dependent repositories - 481 downloads last month - 70 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
staramr 0.10.0
Scans genome contigs against ResFinder, PlasmidFinder, and PointFinder databases
18 versions - Latest release: 9 months ago - 4 dependent repositories - 279 downloads last month - 96 stars on GitHub - 2 maintainers
Top 9.4% on pypi.org
eggnog-mapper 2.1.12
Fast functional annotation of novel sequences using eggNOG orthology assignments.
27 versions - Latest release: 9 months ago - 4 dependent repositories - 680 downloads last month - 521 stars on GitHub - 1 maintainer
intervaltree_bio 1.0.1
Interval tree convenience classes for genomic data
2 versions - Latest release: over 9 years ago - 4 dependent repositories - 37 downloads last month - 7 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
genepattern-notebook 23.1.0
GenePattern Notebook extension for JupyterLab
64 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 492 downloads last month - 44 stars on GitHub - 2 maintainers
uta-tools 0.1.3
Service for querying the biocommons.uta database
20 versions - Latest release: over 1 year ago - 2 dependent packages - 4 dependent repositories - 6 downloads last month - 4 stars on GitHub - 3 maintainers
kipoi-utils 0.7.7
kipoi-utils: utils used in various packages related to kipoi
27 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 1.99 thousand downloads last month - 0 stars on GitHub - 3 maintainers
plastid 0.6.1
Tools for analysis of genomics & sequencing data
12 versions - Latest release: about 2 years ago - 4 dependent repositories - 96 downloads last month - 35 stars on GitHub - 1 maintainer
pybgen 0.7.1
Python module to read BGEN files.
11 versions - Latest release: over 3 years ago - 1 dependent package - 4 dependent repositories - 225 downloads last month - 5 stars on GitHub - 1 maintainer
Top 7.0% on pypi.org
igv-jupyter 2.0.1
Jupyter extension for embedding the igv.js genome visualization in a notebook
10 versions - Latest release: almost 2 years ago - 2 dependent packages - 4 dependent repositories - 173 downloads last month - 154 stars on GitHub - 2 maintainers
Top 5.9% on pypi.org
bed-reader 1.0.4
Read and write the PLINK BED format, simply and efficiently.
33 versions - Latest release: 27 days ago - 7 dependent packages - 4 dependent repositories - 22 thousand downloads last month - 67 stars on GitHub - 2 maintainers
genepattern-python 1.4.5
Library for programmatically interacting with GenePattern from Python.
28 versions - Latest release: almost 5 years ago - 1 dependent package - 4 dependent repositories - 179 downloads last month - 12 stars on GitHub - 2 maintainers
Top 7.0% on pypi.org
pairtools 1.1.0
CLI tools to process mapped Hi-C data
11 versions - Latest release: 29 days ago - 3 dependent packages - 4 dependent repositories - 322 downloads last month - 87 stars on GitHub - 2 maintainers
genipe 1.5.0
An automatic genome-wide imputation pipeline.
13 versions - Latest release: over 3 years ago - 3 dependent repositories - 106 downloads last month - 31 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
ga4gh-schemas 0.0.9
GA4GH API Schemas
13 versions - Latest release: over 7 years ago - 3 dependent repositories - 117 downloads last month - 215 stars on GitHub - 2 maintainers
ga4gh-client 0.0.5
A client for the GA4GH reference server
8 versions - Latest release: over 7 years ago - 3 dependent repositories - 95 downloads last month - 6 stars on GitHub - 2 maintainers
Top 9.8% on pypi.org
tnseq-transit 3.3.4
TRANSIT is a tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface...
50 versions - Latest release: 3 months ago - 3 dependent repositories - 846 downloads last month - 16 stars on GitHub - 2 maintainers
genomicassertions 0.2.5
A package to test common files in genomics (.vcf.gz, .bam)
3 versions - Latest release: almost 8 years ago - 3 dependent repositories - 17 downloads last month - 1 maintainer
Top 6.1% on pypi.org
galaxy-config 24.0.2
Galaxy configuration
16 versions - Latest release: 15 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 8.1% on pypi.org
svtools 0.5.1
Tools for processing and analyzing structural variants
9 versions - Latest release: over 4 years ago - 3 dependent repositories - 242 downloads last month - 141 stars on GitHub - 3 maintainers
Top 8.9% on pypi.org
seqlogo 5.29.9
Python port of the R Bioconductor `seqlogo` package
38 versions - Latest release: 19 days ago - 2 dependent packages - 3 dependent repositories - 495 downloads last month - 25 stars on GitHub - 1 maintainer
pygenomics 0.1.5
A modern genomics library
4 versions - Latest release: about 7 years ago - 3 dependent repositories - 24 downloads last month - 17 stars on GitHub - 2 maintainers
gbgb 0.1.0
Goodbye, GenBank is a package for use with Biopython that gives feature annotations from GenBank ...
2 versions - Latest release: about 8 years ago - 3 dependent repositories - 9 downloads last month - 14 stars on GitHub - 2 maintainers
geneparse 0.8.2
A suite of parse for genotype formats.
17 versions - Latest release: about 1 year ago - 3 dependent repositories - 214 downloads last month - 4 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
svtyper 0.7.1
Bayesian genotyper for structural variants
4 versions - Latest release: over 4 years ago - 3 dependent repositories - 276 downloads last month - 116 stars on GitHub - 3 maintainers
Top 6.7% on pypi.org
igv-notebook 0.5.2
Package for embedding the igv.js genome visualization in IPython notebooks
16 versions - Latest release: about 1 year ago - 3 dependent packages - 3 dependent repositories - 7.8 thousand downloads last month - 55 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
jcvi 1.4.12
Python utility libraries on genome assembly, annotation and comparative genomics
110 versions - Latest release: 11 days ago - 1 dependent package - 3 dependent repositories - 1.75 thousand downloads last month - 702 stars on GitHub - 1 maintainer
pegasusio 0.9.0
Pegasusio is a Python package for reading / writing single-cell genomics data
47 versions - Latest release: 4 months ago - 2 dependent packages - 3 dependent repositories - 2.06 thousand downloads last month - 7 stars on GitHub - 3 maintainers
ga4gh 0.3.5
A reference implementation of the GA4GH API
18 versions - Latest release: over 7 years ago - 3 dependent repositories - 61 downloads last month - 97 stars on GitHub - 3 maintainers
kipoi-conda 0.3.1
kipoi-conda: conda/pip related functionality used by Kipoi
12 versions - Latest release: about 2 years ago - 1 dependent package - 3 dependent repositories - 1.92 thousand downloads last month - 0 stars on GitHub - 3 maintainers
Related Keywords
bioinformatics 351 python 100 sequencing 64 ngs 45 dna 39 genetics 38 workflow 37 pipeline 37 science 35 workflow-engine 32 visualization 31 biology 29 hacktoberfest 27 usegalaxy 26 Galaxy 21 deep-learning 19 alignment 19 machine-learning 19 metagenomics 18 hi-c 17 genome 16 evolution 15 bioinformatics-pipeline 15 genomics-visualization 14 single-cell 14 phylogenetics 14 vcf 14 sequence 14 rna-seq 14 gwas 13 cancer 13 deep learning 12 computational-biology 12 protein 12 next-generation-sequencing 11 comparative-genomics 11 computational biology 11 bacteria 11 transcriptomics 11 microbial-genomics 11 mapping 11 variant 11 microbial 10 sequence-alignment 10 proteomics 10 cuda 10 gpu 10 variants 10 poa 10 computational 10 rna 10 nvidia 10 python-api 10 analysis 10 partial-order-alignment 10 assembly 9 epigenomics 9 research 9 global-health 8 infectious-diseases 8 pathogen 8 genomic-data-analysis 8 machine learning 8 variation 8 genome-analysis 8 data 8 motif 8 microbiology 8 cloud 8 docker 7 python3 7 bioinformatics-tool 7 data-science 7 structural-variation 7 aws 7 artificial intelligence 7 cancer-genomics 7 genomes 7 phylogenomics 7 development 7 fasta 7 python-library 7 variant-calling 7 biopython 6 pandas 6 model zoo 6 cooler 6 genomic-data-science 6 sequence-analysis 6 metadata 6 genotype 6 chromatin 6 galaxy 6 annotation 6 reference 6 azure 6 bigdata 6 Hi-C 6 gcp 6 long-reads 6