Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "genomics" keyword
Top 5.3% on pypi.org
51 versions - Latest release: 6 months ago - 7 dependent packages - 10 dependent repositories - 5.35 thousand downloads last month - 46 stars on GitHub - 7 maintainers
ga4gh.vrs 0.8.5
"GA4GH Variation Representation Specification (VRS) reference implementation (https://github.com/...51 versions - Latest release: 6 months ago - 7 dependent packages - 10 dependent repositories - 5.35 thousand downloads last month - 46 stars on GitHub - 7 maintainers
orange-bioinformatics 2.6.25
Orange Bioinformatics add-on for Orange data mining software package.59 versions - Latest release: over 6 years ago - 1 dependent repositories - 242 downloads last month - 7 maintainers
msgen 0.9.1
Microsoft Genomics Command-line Client18 versions - Latest release: almost 4 years ago - 1 dependent repositories - 185 downloads last month - 8 stars on GitHub - 6 maintainers
Top 0.6% on pypi.org
60 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 815 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
biopython 1.83
Freely available tools for computational molecular biology.60 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 815 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
chewbbaca 3.3.5
A complete suite for gene-by-gene schema creation and strain identification.40 versions - Latest release: 30 days ago - 1 dependent repositories - 295 downloads last month - 118 stars on GitHub - 5 maintainers
Top 5.5% on pypi.org
21 versions - Latest release: over 2 years ago - 3 dependent packages - 62 dependent repositories - 1.9 thousand downloads last month - 76 stars on GitHub - 5 maintainers
kipoiseq 0.7.1
kipoiseq: sequence-based data-loaders for Kipoi21 versions - Latest release: over 2 years ago - 3 dependent packages - 62 dependent repositories - 1.9 thousand downloads last month - 76 stars on GitHub - 5 maintainers
Top 9.0% on pypi.org
130 versions - Latest release: 4 days ago - 1 dependent package - 4 dependent repositories - 1.89 thousand downloads last month - 35 stars on GitHub - 5 maintainers
hicstuff 3.2.3
General purpose stuff to generate and handle Hi-C data in its simplest form.130 versions - Latest release: 4 days ago - 1 dependent package - 4 dependent repositories - 1.89 thousand downloads last month - 35 stars on GitHub - 5 maintainers
ga4gh-common 0.0.7
Common utilities for GA4GH packages7 versions - Latest release: about 7 years ago - 7 dependent repositories - 111 downloads last month - 3 stars on GitHub - 5 maintainers
mixs-linkml 0.1.3
A LinkML model for the MIxS standard3 versions - Latest release: about 2 years ago - 1 dependent repositories - 29 downloads last month - 33 stars on GitHub - 4 maintainers
Top 6.9% on pypi.org
12 versions - Latest release: over 11 years ago - 24 dependent repositories - 197 downloads last month - 86 stars on GitHub - 4 maintainers
cogent 1.5.3
COmparative GENomics Toolkit12 versions - Latest release: over 11 years ago - 24 dependent repositories - 197 downloads last month - 86 stars on GitHub - 4 maintainers
Top 8.8% on pypi.org
47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
pysnptools 0.5.11
PySnpTools47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
nmdc-schema 10.3.0
Schema resources for the National Microbiome Data Collaborative (NMDC)73 versions - Latest release: 2 days ago - 3.16 thousand downloads last month - 26 stars on GitHub - 4 maintainers
kipoi-interpret 0.1.2
Kipoi interpret: interepretation plugin for Kipoi3 versions - Latest release: about 5 years ago - 1 dependent repositories - 294 downloads last month - 3 stars on GitHub - 4 maintainers
kipoi-veff 0.3.1
kipoi_veff: variant effect prediction plugin for Kipoi9 versions - Latest release: over 4 years ago - 1 dependent repositories - 161 downloads last month - 6 stars on GitHub - 4 maintainers
mustache-hic 1.3.3
Mustache is a Hi-C analysis tool49 versions - Latest release: 13 days ago - 1 dependent repositories - 437 downloads last month - 53 stars on GitHub - 4 maintainers
hic2cool 1.0.1
Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (f...28 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 1.19 thousand downloads last month - 53 stars on GitHub - 4 maintainers
Top 5.1% on pypi.org
73 versions - Latest release: almost 2 years ago - 2 dependent packages - 6 dependent repositories - 2.01 thousand downloads last month - 229 stars on GitHub - 4 maintainers
kipoi 0.8.6
Kipoi: model zoo for genomics73 versions - Latest release: almost 2 years ago - 2 dependent packages - 6 dependent repositories - 2.01 thousand downloads last month - 229 stars on GitHub - 4 maintainers
Top 8.2% on pypi.org
52 versions - Latest release: 17 days ago - 1 dependent package - 7 dependent repositories - 680 downloads last month - 43 stars on GitHub - 4 maintainers
fastlmm 0.6.8
Fast GWAS52 versions - Latest release: 17 days ago - 1 dependent package - 7 dependent repositories - 680 downloads last month - 43 stars on GitHub - 4 maintainers
Top 6.1% on pypi.org
18 versions - Latest release: 11 days ago - 2 dependent packages - 9 dependent repositories - 272 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-base 24.0.2
Galaxy testing utilities18 versions - Latest release: 11 days ago - 2 dependent packages - 9 dependent repositories - 272 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.1% on pypi.org
20 versions - Latest release: 11 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-job-execution 24.0.2
Galaxy job execution runtime utilities20 versions - Latest release: 11 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 3.8% on pypi.org
26 versions - Latest release: about 1 month ago - 8 dependent packages - 5 dependent repositories - 234 thousand downloads last month - 163 stars on GitHub - 3 maintainers
bioframe 0.6.4
Operations and utilities for Genomic Interval Dataframes.26 versions - Latest release: about 1 month ago - 8 dependent packages - 5 dependent repositories - 234 thousand downloads last month - 163 stars on GitHub - 3 maintainers
Top 3.8% on pypi.org
22 versions - Latest release: 11 days ago - 3 dependent packages - 10 dependent repositories - 665 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-job-metrics 24.0.2
Galaxy job metrics22 versions - Latest release: 11 days ago - 3 dependent packages - 10 dependent repositories - 665 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-apps 24.0.2
Galaxy web apps15 versions - Latest release: 11 days ago - 2 dependent packages - 1 dependent repositories - 233 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
19 versions - Latest release: 11 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-framework 24.0.2
Galaxy web framework19 versions - Latest release: 11 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 3 maintainers
instagraal 0.1.6
Large genome reassembly based on Hi-C data.6 versions - Latest release: about 5 years ago - 1 dependent repositories - 49 downloads last month - 34 stars on GitHub - 3 maintainers
pegasuspy 1.9.1
Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells42 versions - Latest release: 2 months ago - 1 dependent repositories - 1.17 thousand downloads last month - 69 stars on GitHub - 3 maintainers
Top 1.6% on pypi.org
60 versions - Latest release: 11 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-tool-util 24.0.2
Galaxy tool and tool dependency utilities60 versions - Latest release: 11 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
ga4gh 0.3.5
A reference implementation of the GA4GH API18 versions - Latest release: over 7 years ago - 3 dependent repositories - 62 downloads last month - 97 stars on GitHub - 3 maintainers
Top 7.8% on pypi.org
4 versions - Latest release: over 4 years ago - 3 dependent repositories - 313 downloads last month - 116 stars on GitHub - 3 maintainers
svtyper 0.7.1
Bayesian genotyper for structural variants4 versions - Latest release: over 4 years ago - 3 dependent repositories - 313 downloads last month - 116 stars on GitHub - 3 maintainers
patientmatcher 3.1.2
A python and MongoDB-based Matchmaker Exchange server24 versions - Latest release: over 2 years ago - 1 dependent repositories - 129 downloads last month - 11 stars on GitHub - 3 maintainers
Top 5.3% on pypi.org
14 versions - Latest release: 25 days ago - 3 dependent packages - 7 dependent repositories - 520 downloads last month - 120 stars on GitHub - 3 maintainers
cooltools 0.7.0
Analysis tools for genomic interaction data stored in .cool format14 versions - Latest release: 25 days ago - 3 dependent packages - 7 dependent repositories - 520 downloads last month - 120 stars on GitHub - 3 maintainers
genomediff 0.3.1
GenomeDiff (*.gd) file reader6 versions - Latest release: almost 8 years ago - 2 dependent repositories - 52 downloads last month - 2 stars on GitHub - 3 maintainers
Top 3.4% on pypi.org
60 versions - Latest release: 2 months ago - 6 dependent packages - 36 dependent repositories - 2.33 thousand downloads last month - 645 stars on GitHub - 3 maintainers
deeptools 3.5.5
Useful tools for exploring deep sequencing data.60 versions - Latest release: 2 months ago - 6 dependent packages - 36 dependent repositories - 2.33 thousand downloads last month - 645 stars on GitHub - 3 maintainers
Top 3.1% on pypi.org
6 versions - Latest release: over 1 year ago - 4 dependent packages - 13 dependent repositories - 2.96 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-containers 22.1.1
Galaxy Container Modeling and Interaction Abstractions6 versions - Latest release: over 1 year ago - 4 dependent packages - 13 dependent repositories - 2.96 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-selenium 24.0.2
Galaxy Selenium interaction framework19 versions - Latest release: 11 days ago - 1 dependent repositories - 222 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-api 24.0.2
Galaxy API tests18 versions - Latest release: 11 days ago - 1 dependent repositories - 186 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-authnz 19.9.0.dev0
Galaxy AuthNZ1 version - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.4% on pypi.org
16 versions - Latest release: 11 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-files 24.0.2
Galaxy file source framework and default plugins16 versions - Latest release: 11 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 3.6% on pypi.org
25 versions - Latest release: 11 days ago - 5 dependent packages - 13 dependent repositories - 824 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-objectstore 24.0.2
Galaxy objectstore framework and plugins25 versions - Latest release: 11 days ago - 5 dependent packages - 13 dependent repositories - 824 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.4% on pypi.org
19 versions - Latest release: 11 days ago - 4 dependent packages - 13 dependent repositories - 450 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-app 24.0.2
Galaxy application (backend)19 versions - Latest release: 11 days ago - 4 dependent packages - 13 dependent repositories - 450 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.2% on pypi.org
19 versions - Latest release: 11 days ago - 2 dependent packages - 10 dependent repositories - 396 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-auth 24.0.2
Galaxy auth framework and implementations19 versions - Latest release: 11 days ago - 2 dependent packages - 10 dependent repositories - 396 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-selenium 22.1.1
Galaxy Selenium Tests3 versions - Latest release: over 1 year ago - 1 dependent repositories - 30 downloads last month - 1,315 stars on GitHub - 3 maintainers
oxbow 0.3.1
Read specialized bioinformatic file formats into dataframes.4 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 913 downloads last month - 39 stars on GitHub - 3 maintainers
cgat 0.7.2
cgat : the Computational Genomics Analysis Toolkit35 versions - Latest release: about 1 month ago - 202 downloads last month - 3 maintainers
uta-tools 0.1.3
Service for querying the biocommons.uta database20 versions - Latest release: over 1 year ago - 2 dependent packages - 4 dependent repositories - 6 downloads last month - 4 stars on GitHub - 3 maintainers
mitywgs 1.0.0 💰
A sensitive Mitochondrial variant detection pipeline from WGS data10 versions - Latest release: 4 months ago - 1 dependent repositories - 107 downloads last month - 34 stars on GitHub - 3 maintainers
readfish 2024.2.0
ONT adaptive sampling10 versions - Latest release: 9 days ago - 1 dependent repositories - 285 downloads last month - 161 stars on GitHub - 3 maintainers
Top 8.1% on pypi.org
9 versions - Latest release: over 4 years ago - 3 dependent repositories - 242 downloads last month - 141 stars on GitHub - 3 maintainers
svtools 0.5.1
Tools for processing and analyzing structural variants9 versions - Latest release: over 4 years ago - 3 dependent repositories - 242 downloads last month - 141 stars on GitHub - 3 maintainers
chromosight 1.6.3
Detect loops (and other patterns) in Hi-C contact maps.55 versions - Latest release: over 1 year ago - 2 dependent repositories - 386 downloads last month - 55 stars on GitHub - 3 maintainers
igv 0.10.0
Jupyter extension for embedding the genome visualation igv.js in a notebook9 versions - Latest release: about 3 years ago - 6 dependent repositories - 164 downloads last month - 155 stars on GitHub - 3 maintainers
checkqc 4.0.2
A simple program to parse Illumina NGS data and check it for quality criteria.37 versions - Latest release: 26 days ago - 1 dependent repositories - 504 downloads last month - 24 stars on GitHub - 3 maintainers
fgpyo 0.3.0 💰
Python bioinformatics and genomics library14 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 877 downloads last month - 23 stars on GitHub - 3 maintainers
rgt 1.0.2
Toolkit to perform regulatory genomics data analysis30 versions - Latest release: 10 months ago - 1 dependent repositories - 134 downloads last month - 100 stars on GitHub - 3 maintainers
Top 6.1% on pypi.org
16 versions - Latest release: 11 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-config 24.0.2
Galaxy configuration16 versions - Latest release: 11 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-driver 24.0.2
Galaxy test driver18 versions - Latest release: 11 days ago - 1 dependent package - 1 dependent repositories - 185 downloads last month - 1,315 stars on GitHub - 3 maintainers
pegasusio 0.9.0
Pegasusio is a Python package for reading / writing single-cell genomics data47 versions - Latest release: 4 months ago - 2 dependent packages - 3 dependent repositories - 2.06 thousand downloads last month - 7 stars on GitHub - 3 maintainers
galaxy-model-tools 19.9.0.dev2
Galaxy Model Tools`1 version - Latest release: over 2 years ago - 1 dependent repositories - 9 downloads last month - 1,315 stars on GitHub - 3 maintainers
genomicsdb 0.0.9.13
Experimental Python Bindings for querying GenomicsDB18 versions - Latest release: 4 days ago - 1 dependent repositories - 1.06 thousand downloads last month - 1 stars on GitHub - 3 maintainers
kipoi-utils 0.7.7
kipoi-utils: utils used in various packages related to kipoi27 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 1.99 thousand downloads last month - 0 stars on GitHub - 3 maintainers
Top 1.9% on pypi.org
36 versions - Latest release: 11 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-util 24.0.2
Galaxy generic utilities36 versions - Latest release: 11 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
dram-bio 1.5.0
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of functio...29 versions - Latest release: 5 months ago - 1 dependent repositories - 413 downloads last month - 223 stars on GitHub - 3 maintainers
grapetree 1.6.1
Web interface of GrapeTree, which is a program for phylogenetic analysis.16 versions - Latest release: over 4 years ago - 1 dependent repositories - 109 downloads last month - 74 stars on GitHub - 3 maintainers
galaxy-test-tools 19.9.0.dev2
Galaxy Test Tools`1 version - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
18 versions - Latest release: 11 days ago - 5 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-stack 24.0.2
Galaxy web stack abstraction18 versions - Latest release: 11 days ago - 5 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 3 maintainers
phigaro 2.4.0
Phigaro is a scalable command-line tool for predicting phages and prophages.34 versions - Latest release: 4 months ago - 1 dependent repositories - 264 downloads last month - 46 stars on GitHub - 3 maintainers
genomic-benchmarks 0.0.9
Genomic Benchmarks8 versions - Latest release: almost 2 years ago - 1 dependent repositories - 949 downloads last month - 87 stars on GitHub - 3 maintainers
ga4gh.vrsatile.pydantic 0.2.0
"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"24 versions - Latest release: 8 months ago - 7 dependent packages - 10 dependent repositories - 189 downloads last month - 0 stars on GitHub - 3 maintainers
Top 4.9% on pypi.org
24 versions - Latest release: 11 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-data 24.0.2
Galaxy datatype framework and datatypes24 versions - Latest release: 11 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
kipoi-conda 0.3.1
kipoi-conda: conda/pip related functionality used by Kipoi12 versions - Latest release: about 2 years ago - 1 dependent package - 3 dependent repositories - 1.92 thousand downloads last month - 0 stars on GitHub - 3 maintainers
Top 9.8% on pypi.org
10 versions - Latest release: over 5 years ago - 3 dependent packages - 2 dependent repositories - 217 downloads last month - 216 stars on GitHub - 3 maintainers
hicexplorer 2.2.1
Set of programs to process, analyze and visualize Hi-C data10 versions - Latest release: over 5 years ago - 3 dependent packages - 2 dependent repositories - 217 downloads last month - 216 stars on GitHub - 3 maintainers
agct 0.1.0.dev1
Another Genome Conversion Tool: Python frontend to Rust chainfile crate2 versions - Latest release: 4 months ago - 1 dependent package - 2.32 thousand downloads last month - 2 stars on GitHub - 3 maintainers
Top 5.7% on pypi.org
19 versions - Latest release: over 2 years ago - 1 dependent package - 34 dependent repositories - 238 downloads last month - 776 stars on GitHub - 3 maintainers
google-nucleus 0.6.0
A library for reading and writing genomics data.19 versions - Latest release: over 2 years ago - 1 dependent package - 34 dependent repositories - 238 downloads last month - 776 stars on GitHub - 3 maintainers
divbrowse 1.1.0
A web application for interactive visualization and analysis of genotypic variant matrices8 versions - Latest release: about 1 year ago - 1 dependent repositories - 42 downloads last month - 15 stars on GitHub - 2 maintainers
pyfish 1.0.3
Plotting tool for evolutionary population dynamics. Creates a Fish (Muller) plot.4 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 40 downloads last month - 2 maintainers
debarcer 2.1.4
A package for de-barcoding and error correction of sequencing data containing molecular barcodes.8 versions - Latest release: about 3 years ago - 1 dependent repositories - 86 downloads last month - 13 stars on GitHub - 2 maintainers
Top 9.8% on pypi.org
50 versions - Latest release: 3 months ago - 3 dependent repositories - 846 downloads last month - 16 stars on GitHub - 2 maintainers
tnseq-transit 3.3.4
TRANSIT is a tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface...50 versions - Latest release: 3 months ago - 3 dependent repositories - 846 downloads last month - 16 stars on GitHub - 2 maintainers
cazy-webscraper 2.3.0
A tool to automate retrieving data from CAZy, build a local CAZyme SQL database, and throughly in...31 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 226 downloads last month - 13 stars on GitHub - 2 maintainers
Top 9.0% on pypi.org
25 versions - Latest release: about 4 years ago - 1 dependent package - 4 dependent repositories - 563 downloads last month - 32 stars on GitHub - 2 maintainers
concise 0.6.9
CONCISE (COnvolutional Neural for CIS-regulatory Elements)25 versions - Latest release: about 4 years ago - 1 dependent package - 4 dependent repositories - 563 downloads last month - 32 stars on GitHub - 2 maintainers
pybedlite 0.0.4 💰
Python classes for interfacing with bed intervals2 versions - Latest release: 8 months ago - 1 dependent repositories - 641 downloads last month - 12 stars on GitHub - 2 maintainers
circhic 0.4.0
Visualizing HiC data of circular chromosomes5 versions - Latest release: 4 months ago - 17 downloads last month - 1 stars on GitHub - 2 maintainers
charger 0.5.2
Characterization of Germline variants4 versions - Latest release: over 6 years ago - 1 dependent repositories - 52 downloads last month - 92 stars on GitHub - 2 maintainers
lib310-lite 0.1.1
lib310 Lite Python Package52 versions - Latest release: 9 months ago - 292 downloads last month - 2 maintainers
Top 9.9% on pypi.org
32 versions - Latest release: about 2 months ago - 2 dependent packages - 8 dependent repositories - 1.73 thousand downloads last month - 31 stars on GitHub - 2 maintainers
cgatcore 0.6.16
cgatcore : the Computational Genomics Analysis Toolkit32 versions - Latest release: about 2 months ago - 2 dependent packages - 8 dependent repositories - 1.73 thousand downloads last month - 31 stars on GitHub - 2 maintainers
bionorm 0.7.11
normalize, verify, and select genomic data20 versions - Latest release: about 3 years ago - 108 downloads last month - 0 stars on GitHub - 2 maintainers
coolpuppy 1.1.0
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.23 versions - Latest release: 10 months ago - 1 dependent repositories - 200 downloads last month - 71 stars on GitHub - 2 maintainers
mutalyzer-algebra 1.5.1
A Boolean Algebra for Genetic Variants20 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 108 downloads last month - 10 stars on GitHub - 2 maintainers
pyranges1 1.0.1
GenomicRanges for Python.6 versions - Latest release: 6 days ago - 1 dependent package - 610 downloads last month - 5 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
45 versions - Latest release: 3 months ago - 10 dependent packages - 21 dependent repositories - 63.8 thousand downloads last month - 38 stars on GitHub - 2 maintainers
biocommons.seqrepo 0.6.9
Non-redundant, compressed, journalled, file-based storage for biological sequences45 versions - Latest release: 3 months ago - 10 dependent packages - 21 dependent repositories - 63.8 thousand downloads last month - 38 stars on GitHub - 2 maintainers
mikado 2.3.4
A Python3 annotation program to select the best gene model in each locus28 versions - Latest release: almost 2 years ago - 2 dependent repositories - 168 downloads last month - 86 stars on GitHub - 2 maintainers
miniwdl-aws-studio 0.0.2
AWS CDK app to add miniwdl+GWFCore to existing SageMaker Studio2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 3 downloads last month - 140 stars on GitHub - 2 maintainers
gbgb 0.1.0
Goodbye, GenBank is a package for use with Biopython that gives feature annotations from GenBank ...2 versions - Latest release: about 8 years ago - 3 dependent repositories - 9 downloads last month - 14 stars on GitHub - 2 maintainers
chewbbaca-nserver 1.0.4
chewBBACA comunicates with the nomenclature server HUUURRR5 versions - Latest release: over 5 years ago - 1 dependent repositories - 84 downloads last month - 118 stars on GitHub - 2 maintainers
mavis 3.1.2
A Structural Variant Post-Processing Package40 versions - Latest release: 9 months ago - 1 dependent repositories - 126 downloads last month - 67 stars on GitHub - 2 maintainers
genomedashboard 0.0.90
Genome Dashboard is the logic behind a web-based prototype of a genomics dashboard, specifically ...64 versions - Latest release: over 4 years ago - 1 dependent repositories - 496 downloads last month - 2 stars on GitHub - 2 maintainers
cubat 0.2.0
CUBAT -- CUB Analysis Toolkit7 versions - Latest release: about 1 year ago - 57 downloads last month - 4 stars on GitHub - 2 maintainers
adapt-diagnostics 1.6.0
Tools to design guides for diagnostics6 versions - Latest release: over 1 year ago - 1 dependent repositories - 103 downloads last month - 24 stars on GitHub - 2 maintainers
dipwmsearch 0.1.8
Provides functions to search for any di-nucleotidic Position Weight Matrix (di-PWM) in a genomic ...13 versions - Latest release: about 1 year ago - 1 dependent repositories - 80 downloads last month - 2 maintainers
scflow 0.0.1
scflow : cribbslab single cell pipeline1 version - Latest release: over 4 years ago - 1 dependent repositories - 16 downloads last month - 2 maintainers
Top 3.8% on pypi.org
39 versions - Latest release: about 1 year ago - 4 dependent packages - 5 dependent repositories - 2.15 thousand downloads last month - 461 stars on GitHub - 2 maintainers
umi-tools 1.1.4
umi_tools: Tools for UMI analyses39 versions - Latest release: about 1 year ago - 4 dependent packages - 5 dependent repositories - 2.15 thousand downloads last month - 461 stars on GitHub - 2 maintainers
tadlib 0.4.5
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains21 versions - Latest release: over 1 year ago - 1 dependent repositories - 225 downloads last month - 39 stars on GitHub - 2 maintainers
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bioinformatics
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machine-learning
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deep-learning
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metagenomics
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