Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "genomics" keyword
Top 5.5% on pypi.org
689 versions - Latest release: about 1 month ago - 11 dependent repositories - 6.93 thousand downloads last month - 365 stars on GitHub - 1 maintainer
arvados-python-client 2.7.2
Arvados client library689 versions - Latest release: about 1 month ago - 11 dependent repositories - 6.93 thousand downloads last month - 365 stars on GitHub - 1 maintainer
arvados_fuse 2.7.2
Arvados FUSE driver503 versions - Latest release: about 1 month ago - 2 dependent repositories - 1.28 thousand downloads last month - 365 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
361 versions - Latest release: about 1 month ago - 5 dependent repositories - 1.56 thousand downloads last month - 365 stars on GitHub - 1 maintainer
arvados-cwl-runner 2.7.2
Arvados Common Workflow Language runner361 versions - Latest release: about 1 month ago - 5 dependent repositories - 1.56 thousand downloads last month - 365 stars on GitHub - 1 maintainer
cosmos-wfm 2.13.11
Workflow Management System229 versions - Latest release: over 3 years ago - 4 dependent repositories - 481 downloads last month - 70 stars on GitHub - 1 maintainer
genomeworks-cuda-10-1 2021.2.2
NVIDIA genomics python libraries and utiliites224 versions - Latest release: about 3 years ago - 1 dependent repositories - 1.62 thousand downloads last month - 276 stars on GitHub - 1 maintainer
genomeworks-cuda-10-0 2021.2.0
NVIDIA genomics python libraries and utiliites221 versions - Latest release: about 3 years ago - 1 dependent repositories - 2 thousand downloads last month - 276 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
208 versions - Latest release: 12 months ago - 6 dependent repositories - 6.68 thousand downloads last month - 68 stars on GitHub - 1 maintainer
aegea 4.4.1 💰
Amazon Web Services Operator Interface208 versions - Latest release: 12 months ago - 6 dependent repositories - 6.68 thousand downloads last month - 68 stars on GitHub - 1 maintainer
variantworks 0.0.0
NVIDIA genomics python libraries and utiliites174 versions - Latest release: about 4 years ago - 1 dependent repositories - 725 downloads last month - 43 stars on GitHub - 1 maintainer
genomeworks-cuda-9-2 0.5.3
NVIDIA genomics python libraries and utiliites155 versions - Latest release: over 3 years ago - 1 dependent repositories - 669 downloads last month - 276 stars on GitHub - 1 maintainer
genomehubs 2.8.8
GenomeHubs152 versions - Latest release: 6 days ago - 1 dependent repositories - 1.27 thousand downloads last month - 13 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
150 versions - Latest release: about 1 month ago - 10 dependent packages - 43 dependent repositories - 40.5 thousand downloads last month - 925 stars on GitHub - 2 maintainers
hail 0.2.130
Scalable library for exploring and analyzing genomic data.150 versions - Latest release: about 1 month ago - 10 dependent packages - 43 dependent repositories - 40.5 thousand downloads last month - 925 stars on GitHub - 2 maintainers
genomeworks-cuda-9-0 0.5.3
NVIDIA genomics python libraries and utiliites150 versions - Latest release: over 3 years ago - 1 dependent repositories - 692 downloads last month - 276 stars on GitHub - 1 maintainer
Top 9.0% on pypi.org
130 versions - Latest release: 9 days ago - 1 dependent package - 4 dependent repositories - 1.89 thousand downloads last month - 35 stars on GitHub - 5 maintainers
hicstuff 3.2.3
General purpose stuff to generate and handle Hi-C data in its simplest form.130 versions - Latest release: 9 days ago - 1 dependent package - 4 dependent repositories - 1.89 thousand downloads last month - 35 stars on GitHub - 5 maintainers
Top 4.8% on pypi.org
122 versions - Latest release: 2 months ago - 3 dependent packages - 15 dependent repositories - 82.6 thousand downloads last month - 45 stars on GitHub - 1 maintainer
sevenbridges-python 2.11.0
SBG API python client bindings122 versions - Latest release: 2 months ago - 3 dependent packages - 15 dependent repositories - 82.6 thousand downloads last month - 45 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
120 versions - Latest release: 13 days ago - 56 dependent packages - 56 dependent repositories - 15.5 thousand downloads last month - 389 stars on GitHub - 2 maintainers
pyranges 0.1.1
GenomicRanges for Python.120 versions - Latest release: 13 days ago - 56 dependent packages - 56 dependent repositories - 15.5 thousand downloads last month - 389 stars on GitHub - 2 maintainers
Top 9.0% on pypi.org
120 versions - Latest release: 13 days ago - 1 dependent repositories - 22 thousand downloads last month - 3 stars on GitHub - 1 maintainer
gencove 2.16.3
Gencove API and CLI tool120 versions - Latest release: 13 days ago - 1 dependent repositories - 22 thousand downloads last month - 3 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
110 versions - Latest release: 12 days ago - 1 dependent package - 3 dependent repositories - 1.75 thousand downloads last month - 702 stars on GitHub - 1 maintainer
jcvi 1.4.12
Python utility libraries on genome assembly, annotation and comparative genomics110 versions - Latest release: 12 days ago - 1 dependent package - 3 dependent repositories - 1.75 thousand downloads last month - 702 stars on GitHub - 1 maintainer
fwdpy11 0.22.2
Forward-time population genetic simulation in Python106 versions - Latest release: about 1 month ago - 1 dependent repositories - 2.45 thousand downloads last month - 27 stars on GitHub - 1 maintainer
Top 9.8% on pypi.org
104 versions - Latest release: about 3 years ago - 1 dependent repositories - 566 downloads last month - 276 stars on GitHub - 1 maintainer
genomeworks-cuda-10-2 2021.2.2
NVIDIA genomics python libraries and utiliites104 versions - Latest release: about 3 years ago - 1 dependent repositories - 566 downloads last month - 276 stars on GitHub - 1 maintainer
strkit 0.14.0
A toolkit for analyzing variation in short(ish) tandem repeats.100 versions - Latest release: 4 months ago - 1 dependent repositories - 614 downloads last month - 2 stars on GitHub - 1 maintainer
Top 9.0% on pypi.org
99 versions - Latest release: 5 months ago - 1 dependent repositories - 902 downloads last month - 373 stars on GitHub - 1 maintainer
enformer-pytorch 0.8.8 💰
Enformer - Pytorch99 versions - Latest release: 5 months ago - 1 dependent repositories - 902 downloads last month - 373 stars on GitHub - 1 maintainer
genomeworks-cuda-11-0 2021.2.2
NVIDIA genomics python libraries and utiliites98 versions - Latest release: about 3 years ago - 1 dependent repositories - 340 downloads last month - 276 stars on GitHub - 1 maintainer
genomeworks-cuda-11-1 2021.2.2
NVIDIA genomics python libraries and utiliites98 versions - Latest release: about 3 years ago - 1 dependent repositories - 995 downloads last month - 273 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
93 versions - Latest release: 4 months ago - 43 dependent packages - 99 dependent repositories - 62.7 thousand downloads last month - 357 stars on GitHub - 1 maintainer
cyvcf2 0.30.28 💰
fast vcf parsing with cython + htslib93 versions - Latest release: 4 months ago - 43 dependent packages - 99 dependent repositories - 62.7 thousand downloads last month - 357 stars on GitHub - 1 maintainer
Top 1.9% on pypi.org
88 versions - Latest release: 4 months ago - 76 dependent packages - 268 dependent repositories - 113 thousand downloads last month - 441 stars on GitHub - 1 maintainer
pyfaidx 0.8.1
pyfaidx: efficient pythonic random access to fasta subsequences88 versions - Latest release: 4 months ago - 76 dependent packages - 268 dependent repositories - 113 thousand downloads last month - 441 stars on GitHub - 1 maintainer
riboseed 0.4.90
riboSeed: assemble across rDNA regions76 versions - Latest release: over 4 years ago - 1 dependent repositories - 550 downloads last month - 8 stars on GitHub - 1 maintainer
bycon 1.6.5
A Python-based environment for the Beacon v2 genomics API76 versions - Latest release: about 2 months ago - 339 downloads last month - 4 stars on GitHub - 1 maintainer
nmdc-schema 10.3.0
Schema resources for the National Microbiome Data Collaborative (NMDC)74 versions - Latest release: 7 days ago - 1.66 thousand downloads last month - 26 stars on GitHub - 4 maintainers
Top 3.0% on pypi.org
73 versions - Latest release: over 1 year ago - 7 dependent packages - 34 dependent repositories - 35.2 thousand downloads last month - 232 stars on GitHub - 2 maintainers
hgvs 1.5.4
HGVS Parser, Formatter, Mapper, Validator73 versions - Latest release: over 1 year ago - 7 dependent packages - 34 dependent repositories - 35.2 thousand downloads last month - 232 stars on GitHub - 2 maintainers
Top 5.1% on pypi.org
73 versions - Latest release: almost 2 years ago - 2 dependent packages - 6 dependent repositories - 2.01 thousand downloads last month - 229 stars on GitHub - 4 maintainers
kipoi 0.8.6
Kipoi: model zoo for genomics73 versions - Latest release: almost 2 years ago - 2 dependent packages - 6 dependent repositories - 2.01 thousand downloads last month - 229 stars on GitHub - 4 maintainers
geonomics 1.4.1
A package for landscape genomic simulation69 versions - Latest release: 23 days ago - 7 dependent repositories - 509 downloads last month - 9 stars on GitHub - 1 maintainer
gcgc 1.0.0 💰
GCGC is a preprocessing library for biological sequence model development.67 versions - Latest release: over 3 years ago - 1 dependent repositories - 230 downloads last month - 9 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
67 versions - Latest release: about 1 year ago - 15 dependent packages - 42 dependent repositories - 19.5 thousand downloads last month - 199 stars on GitHub - 1 maintainer
ncls 0.0.68
A fast interval tree-like implementation in C, wrapped for the Python ecosystem.67 versions - Latest release: about 1 year ago - 15 dependent packages - 42 dependent repositories - 19.5 thousand downloads last month - 199 stars on GitHub - 1 maintainer
phykit 1.19.4
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies65 versions - Latest release: 20 days ago - 1 dependent repositories - 1.06 thousand downloads last month - 46 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
64 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 492 downloads last month - 44 stars on GitHub - 2 maintainers
genepattern-notebook 23.1.0
GenePattern Notebook extension for JupyterLab64 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 492 downloads last month - 44 stars on GitHub - 2 maintainers
genomedashboard 0.0.90
Genome Dashboard is the logic behind a web-based prototype of a genomics dashboard, specifically ...64 versions - Latest release: over 4 years ago - 1 dependent repositories - 248 downloads last month - 2 stars on GitHub - 2 maintainers
Top 0.6% on pypi.org
60 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 821 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
biopython 1.83
Freely available tools for computational molecular biology.60 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 821 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
Top 3.4% on pypi.org
60 versions - Latest release: 3 months ago - 6 dependent packages - 36 dependent repositories - 2.33 thousand downloads last month - 645 stars on GitHub - 3 maintainers
deeptools 3.5.5
Useful tools for exploring deep sequencing data.60 versions - Latest release: 3 months ago - 6 dependent packages - 36 dependent repositories - 2.33 thousand downloads last month - 645 stars on GitHub - 3 maintainers
Top 1.6% on pypi.org
60 versions - Latest release: 16 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-tool-util 24.0.2
Galaxy tool and tool dependency utilities60 versions - Latest release: 16 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.6% on pypi.org
59 versions - Latest release: 11 months ago - 6 dependent packages - 28 dependent repositories - 87.4 thousand downloads last month - 17 stars on GitHub - 2 maintainers
bioutils 0.5.8
miscellaneous simple bioinformatics utilities and lookup tables59 versions - Latest release: 11 months ago - 6 dependent packages - 28 dependent repositories - 87.4 thousand downloads last month - 17 stars on GitHub - 2 maintainers
cptac 1.5.13
Python packaging for CPTAC data59 versions - Latest release: 3 months ago - 1 dependent repositories - 673 downloads last month - 79 stars on GitHub - 2 maintainers
orange-bioinformatics 2.6.25
Orange Bioinformatics add-on for Orange data mining software package.59 versions - Latest release: over 6 years ago - 1 dependent repositories - 242 downloads last month - 7 maintainers
Top 2.1% on pypi.org
58 versions - Latest release: 3 months ago - 16 dependent packages - 83 dependent repositories - 5.33 thousand downloads last month - 167 stars on GitHub - 2 maintainers
msprime 1.3.1
Simulate genealogical trees and genomic sequence data using population genetic models58 versions - Latest release: 3 months ago - 16 dependent packages - 83 dependent repositories - 5.33 thousand downloads last month - 167 stars on GitHub - 2 maintainers
chromosight 1.6.3
Detect loops (and other patterns) in Hi-C contact maps.55 versions - Latest release: over 1 year ago - 2 dependent repositories - 386 downloads last month - 55 stars on GitHub - 3 maintainers
omicidx 1.11.3
The OmicIDX project collects, reprocesses, and then republishes metadata from multiple public gen...54 versions - Latest release: about 1 month ago - 1 dependent repositories - 603 downloads last month - 12 stars on GitHub - 1 maintainer
bamnostic 1.1.10
Pure Python, OS-agnostic Binary Alignment Map (BAM) random access and parsing tool54 versions - Latest release: about 1 year ago - 3 dependent packages - 1 dependent repositories - 643 downloads last month - 94 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
53 versions - Latest release: over 3 years ago - 7 dependent repositories - 285 downloads last month - 151 stars on GitHub - 1 maintainer
ariba 2.14.6
ARIBA: Antibiotic Resistance Identification By Assembly53 versions - Latest release: over 3 years ago - 7 dependent repositories - 285 downloads last month - 151 stars on GitHub - 1 maintainer
Top 8.2% on pypi.org
52 versions - Latest release: 22 days ago - 1 dependent package - 7 dependent repositories - 680 downloads last month - 43 stars on GitHub - 4 maintainers
fastlmm 0.6.8
Fast GWAS52 versions - Latest release: 22 days ago - 1 dependent package - 7 dependent repositories - 680 downloads last month - 43 stars on GitHub - 4 maintainers
lib310-lite 0.1.1
lib310 Lite Python Package52 versions - Latest release: 10 months ago - 292 downloads last month - 2 maintainers
Top 5.3% on pypi.org
51 versions - Latest release: 7 months ago - 7 dependent packages - 10 dependent repositories - 5.35 thousand downloads last month - 46 stars on GitHub - 7 maintainers
ga4gh.vrs 0.8.5
"GA4GH Variation Representation Specification (VRS) reference implementation (https://github.com/...51 versions - Latest release: 7 months ago - 7 dependent packages - 10 dependent repositories - 5.35 thousand downloads last month - 46 stars on GitHub - 7 maintainers
Top 9.8% on pypi.org
50 versions - Latest release: 3 months ago - 3 dependent repositories - 846 downloads last month - 16 stars on GitHub - 2 maintainers
tnseq-transit 3.3.4
TRANSIT is a tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface...50 versions - Latest release: 3 months ago - 3 dependent repositories - 846 downloads last month - 16 stars on GitHub - 2 maintainers
Top 5.6% on pypi.org
50 versions - Latest release: 5 months ago - 458 downloads last month - 4 stars on GitHub - 1 maintainer
geneweaver-client 0.6.0
A Python Client for the Geneweaver API50 versions - Latest release: 5 months ago - 458 downloads last month - 4 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
50 versions - Latest release: about 1 month ago - 18 dependent packages - 51 dependent repositories - 6.32 thousand downloads last month - 727 stars on GitHub - 1 maintainer
goatools 1.4.4
Python scripts to find enrichment of GO terms50 versions - Latest release: about 1 month ago - 18 dependent packages - 51 dependent repositories - 6.32 thousand downloads last month - 727 stars on GitHub - 1 maintainer
mustache-hic 1.3.3
Mustache is a Hi-C analysis tool49 versions - Latest release: 18 days ago - 1 dependent repositories - 437 downloads last month - 53 stars on GitHub - 4 maintainers
geneweaver-core 0.9.1
The core of the Jax-Geneweaver Python library47 versions - Latest release: about 1 month ago - 4 dependent packages - 1 dependent repositories - 772 downloads last month - 4 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
pysnptools 0.5.11
PySnpTools47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
pegasusio 0.9.0
Pegasusio is a Python package for reading / writing single-cell genomics data47 versions - Latest release: 4 months ago - 2 dependent packages - 3 dependent repositories - 2.06 thousand downloads last month - 7 stars on GitHub - 3 maintainers
dajin2 0.4.6
One-step genotyping tools for targeted long-read sequencing46 versions - Latest release: 6 days ago - 406 downloads last month - 4 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
46 versions - Latest release: 8 months ago - 22 dependent packages - 64 dependent repositories - 3.68 thousand downloads last month - 191 stars on GitHub - 2 maintainers
cooler 0.9.3
Sparse binary format for genomic interaction matrices.46 versions - Latest release: 8 months ago - 22 dependent packages - 64 dependent repositories - 3.68 thousand downloads last month - 191 stars on GitHub - 2 maintainers
geneweaver-db 0.3.8
Database Interaction Services for GeneWeaver46 versions - Latest release: 13 days ago - 1.66 thousand downloads last month - 4 stars on GitHub - 1 maintainer
scarf 0.28.9
Scarf45 versions - Latest release: 4 months ago - 1 dependent repositories - 432 downloads last month - 89 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
45 versions - Latest release: 3 months ago - 10 dependent packages - 21 dependent repositories - 65.3 thousand downloads last month - 38 stars on GitHub - 2 maintainers
biocommons.seqrepo 0.6.9
Non-redundant, compressed, journalled, file-based storage for biological sequences45 versions - Latest release: 3 months ago - 10 dependent packages - 21 dependent repositories - 65.3 thousand downloads last month - 38 stars on GitHub - 2 maintainers
clipkit 2.3.0
Alignment trimming software for phylogenetics.44 versions - Latest release: 23 days ago - 1 dependent repositories - 728 downloads last month - 52 stars on GitHub - 1 maintainer
pegasuspy 1.9.1
Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells42 versions - Latest release: 2 months ago - 1 dependent repositories - 1.17 thousand downloads last month - 69 stars on GitHub - 3 maintainers
uorf4u 0.9.5
A tool for short uORF annotation.42 versions - Latest release: about 1 year ago - 90 downloads last month - 10 stars on GitHub - 1 maintainer
allcools 1.1.0
Toolkit for single-cell DNA methylome and multiomic data analysis.41 versions - Latest release: about 1 month ago - 1 dependent repositories - 324 downloads last month - 33 stars on GitHub - 1 maintainer
genovi 0.4.3
Generates full genome images from a gbff file40 versions - Latest release: over 1 year ago - 1 dependent repositories - 207 downloads last month - 63 stars on GitHub - 2 maintainers
mavis 3.1.2
A Structural Variant Post-Processing Package40 versions - Latest release: 9 months ago - 1 dependent repositories - 126 downloads last month - 67 stars on GitHub - 2 maintainers
Top 7.9% on pypi.org
40 versions - Latest release: 22 days ago - 5 dependent packages - 13 dependent repositories - 2.39 thousand downloads last month - 16 stars on GitHub - 1 maintainer
pyrle 0.0.40
Numeric run length encoding for Python.40 versions - Latest release: 22 days ago - 5 dependent packages - 13 dependent repositories - 2.39 thousand downloads last month - 16 stars on GitHub - 1 maintainer
chewbbaca 3.3.5
A complete suite for gene-by-gene schema creation and strain identification.40 versions - Latest release: about 1 month ago - 1 dependent repositories - 398 downloads last month - 118 stars on GitHub - 5 maintainers
Top 3.8% on pypi.org
39 versions - Latest release: about 1 year ago - 4 dependent packages - 5 dependent repositories - 2.15 thousand downloads last month - 461 stars on GitHub - 2 maintainers
umi-tools 1.1.4
umi_tools: Tools for UMI analyses39 versions - Latest release: about 1 year ago - 4 dependent packages - 5 dependent repositories - 2.15 thousand downloads last month - 461 stars on GitHub - 2 maintainers
Top 8.9% on pypi.org
38 versions - Latest release: 20 days ago - 2 dependent packages - 3 dependent repositories - 495 downloads last month - 25 stars on GitHub - 1 maintainer
seqlogo 5.29.9
Python port of the R Bioconductor `seqlogo` package38 versions - Latest release: 20 days ago - 2 dependent packages - 3 dependent repositories - 495 downloads last month - 25 stars on GitHub - 1 maintainer
checkqc 4.0.2
A simple program to parse Illumina NGS data and check it for quality criteria.37 versions - Latest release: about 1 month ago - 1 dependent repositories - 658 downloads last month - 24 stars on GitHub - 3 maintainers
transvar 2.5.10.20211024
Transcript-based Variant annotator37 versions - Latest release: over 2 years ago - 1 dependent repositories - 290 downloads last month - 113 stars on GitHub - 1 maintainer
pyminknow 1.0.3
This service mimics a Nanopore minKNOW gene sequencing device by using its gRPC interface.37 versions - Latest release: over 3 years ago - 1 dependent repositories - 264 downloads last month - 8 stars on GitHub - 1 maintainer
Top 2.5% on pypi.org
36 versions - Latest release: 8 months ago - 16 dependent packages - 54 dependent repositories - 7.75 thousand downloads last month - 144 stars on GitHub - 2 maintainers
tskit 0.5.6
The tree sequence toolkit.36 versions - Latest release: 8 months ago - 16 dependent packages - 54 dependent repositories - 7.75 thousand downloads last month - 144 stars on GitHub - 2 maintainers
Top 1.9% on pypi.org
36 versions - Latest release: 16 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-util 24.0.2
Galaxy generic utilities36 versions - Latest release: 16 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
cgat 0.7.2
cgat : the Computational Genomics Analysis Toolkit35 versions - Latest release: about 2 months ago - 202 downloads last month - 3 maintainers
camsa 1.0.0
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies35 versions - Latest release: over 7 years ago - 229 downloads last month - 24 stars on GitHub - 1 maintainer
phigaro 2.4.0
Phigaro is a scalable command-line tool for predicting phages and prophages.34 versions - Latest release: 5 months ago - 1 dependent repositories - 264 downloads last month - 46 stars on GitHub - 3 maintainers
Top 5.9% on pypi.org
33 versions - Latest release: 27 days ago - 7 dependent packages - 4 dependent repositories - 22 thousand downloads last month - 67 stars on GitHub - 2 maintainers
bed-reader 1.0.4
Read and write the PLINK BED format, simply and efficiently.33 versions - Latest release: 27 days ago - 7 dependent packages - 4 dependent repositories - 22 thousand downloads last month - 67 stars on GitHub - 2 maintainers
Top 6.1% on pypi.org
33 versions - Latest release: about 5 years ago - 5 dependent packages - 14 dependent repositories - 325 downloads last month - 81 stars on GitHub - 1 maintainer
pypairix 0.3.7
Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contain...33 versions - Latest release: about 5 years ago - 5 dependent packages - 14 dependent repositories - 325 downloads last month - 81 stars on GitHub - 1 maintainer
featurextract 0.2.4
Extract genome ferature sequence for biologists33 versions - Latest release: almost 3 years ago - 1 dependent repositories - 72 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
33 versions - Latest release: over 6 years ago - 6 dependent repositories - 145 downloads last month - 212 stars on GitHub - 1 maintainer
circlator 1.5.5
circlator: a tool to circularise genome assemblies33 versions - Latest release: over 6 years ago - 6 dependent repositories - 145 downloads last month - 212 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
32 versions - Latest release: about 2 months ago - 2 dependent packages - 8 dependent repositories - 1.73 thousand downloads last month - 31 stars on GitHub - 2 maintainers
cgatcore 0.6.16
cgatcore : the Computational Genomics Analysis Toolkit32 versions - Latest release: about 2 months ago - 2 dependent packages - 8 dependent repositories - 1.73 thousand downloads last month - 31 stars on GitHub - 2 maintainers
arvados-pam 2.0.4
Arvados PAM module32 versions - Latest release: almost 4 years ago - 68 downloads last month - 365 stars on GitHub - 1 maintainer
cazy-webscraper 2.3.0
A tool to automate retrieving data from CAZy, build a local CAZyme SQL database, and throughly in...31 versions - Latest release: almost 1 year ago - 1 dependent package - 1 dependent repositories - 226 downloads last month - 13 stars on GitHub - 2 maintainers
phispy 4.2.21
Prophage finder using multiple metrics31 versions - Latest release: over 2 years ago - 1 dependent repositories - 116 downloads last month - 64 stars on GitHub - 1 maintainer
wfpm 0.8.0
WorkFlow Package Manager31 versions - Latest release: over 2 years ago - 1 dependent repositories - 139 downloads last month - 9 stars on GitHub - 1 maintainer
rgt 1.0.2
Toolkit to perform regulatory genomics data analysis30 versions - Latest release: 10 months ago - 1 dependent repositories - 299 downloads last month - 100 stars on GitHub - 3 maintainers
gecco-tool 0.9.10
Gene cluster prediction with Conditional random fields.29 versions - Latest release: 3 months ago - 1 dependent repositories - 283 downloads last month - 52 stars on GitHub - 2 maintainers
gnomonicus 2.5.3
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants29 versions - Latest release: about 2 months ago - 1 dependent repositories - 162 downloads last month - 5 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
29 versions - Latest release: about 2 months ago - 27 dependent packages - 49 dependent repositories - 5.16 thousand downloads last month - 1,698 stars on GitHub - 1 maintainer
mappy 2.28
Minimap2 python binding29 versions - Latest release: about 2 months ago - 27 dependent packages - 49 dependent repositories - 5.16 thousand downloads last month - 1,698 stars on GitHub - 1 maintainer
dram-bio 1.5.0
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of functio...29 versions - Latest release: 5 months ago - 1 dependent repositories - 413 downloads last month - 223 stars on GitHub - 3 maintainers
anvio 2.4.0
An interactive analysis and visualization platform for 'omics data. See https://merenlab.org/proj...29 versions - Latest release: almost 7 years ago - 2 dependent repositories - 95 downloads last month - 1 maintainer
Top 8.9% on pypi.org
28 versions - Latest release: 3 months ago - 1 dependent repositories - 935 downloads last month - 320 stars on GitHub - 1 maintainer
igv-reports 1.12.0
Creates self-contained html pages for visual variant review with IGV (igv.js).28 versions - Latest release: 3 months ago - 1 dependent repositories - 935 downloads last month - 320 stars on GitHub - 1 maintainer
hic2cool 1.0.1
Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (f...28 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 1.19 thousand downloads last month - 53 stars on GitHub - 4 maintainers
dysgu 1.6.3
Structural variant calling28 versions - Latest release: about 2 months ago - 1 dependent repositories - 954 downloads last month - 85 stars on GitHub - 1 maintainer
ipr 3.13.0
Python adapter for generating reports uploaded to IPR using the PORI platform28 versions - Latest release: 3 months ago - 1 dependent repositories - 198 downloads last month - 6 stars on GitHub - 2 maintainers
mikado 2.3.4
A Python3 annotation program to select the best gene model in each locus28 versions - Latest release: almost 2 years ago - 2 dependent repositories - 168 downloads last month - 86 stars on GitHub - 2 maintainers
Related Keywords
bioinformatics
351
python
100
sequencing
64
ngs
45
dna
39
genetics
38
pipeline
37
workflow
37
science
35
workflow-engine
32
visualization
31
biology
29
hacktoberfest
27
usegalaxy
26
Galaxy
21
alignment
19
deep-learning
19
machine-learning
19
metagenomics
18
hi-c
17
genome
16
bioinformatics-pipeline
15
evolution
15
phylogenetics
14
rna-seq
14
single-cell
14
sequence
14
genomics-visualization
14
vcf
14
gwas
13
cancer
13
computational-biology
12
deep learning
12
protein
12
mapping
11
bacteria
11
variant
11
next-generation-sequencing
11
transcriptomics
11
comparative-genomics
11
computational biology
11
microbial-genomics
11
microbial
10
proteomics
10
variants
10
sequence-alignment
10
analysis
10
computational
10
rna
10
cuda
10
gpu
10
nvidia
10
partial-order-alignment
10
python-api
10
poa
10
assembly
9
research
9
epigenomics
9
microbiology
8
genome-analysis
8
motif
8
variation
8
cloud
8
global-health
8
infectious-diseases
8
genomic-data-analysis
8
machine learning
8
pathogen
8
data
8
artificial intelligence
7
bioinformatics-tool
7
fasta
7
python3
7
data-science
7
development
7
structural-variation
7
python-library
7
phylogenomics
7
docker
7
aws
7
variant-calling
7
cancer-genomics
7
genomes
7
chromatin
6
genbank
6
metadata
6
cooler
6
biopython
6
annotation
6
reference
6
pandas
6
gcp
6
variant-analysis
6
model zoo
6
bigdata
6
azure
6
genomic-data-science
6
galaxy
6
phage
6
genotype
6