Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "genomics" keyword

Top 0.6% on pypi.org
biopython 1.83
Freely available tools for computational molecular biology.
60 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 821 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
Top 3.8% on pypi.org
bioframe 0.6.4
Operations and utilities for Genomic Interval Dataframes.
27 versions - Latest release: about 2 months ago - 8 dependent packages - 5 dependent repositories - 247 thousand downloads last month - 163 stars on GitHub - 3 maintainers
Top 1.9% on pypi.org
pyfaidx 0.8.1
pyfaidx: efficient pythonic random access to fasta subsequences
88 versions - Latest release: 4 months ago - 76 dependent packages - 268 dependent repositories - 113 thousand downloads last month - 441 stars on GitHub - 1 maintainer
Top 5.6% on pypi.org
bioutils 0.5.8
miscellaneous simple bioinformatics utilities and lookup tables
59 versions - Latest release: 11 months ago - 6 dependent packages - 28 dependent repositories - 87.4 thousand downloads last month - 17 stars on GitHub - 2 maintainers
Top 4.8% on pypi.org
sevenbridges-python 2.11.0
SBG API python client bindings
122 versions - Latest release: 2 months ago - 3 dependent packages - 15 dependent repositories - 82.6 thousand downloads last month - 45 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
biocommons.seqrepo 0.6.9
Non-redundant, compressed, journalled, file-based storage for biological sequences
45 versions - Latest release: 3 months ago - 10 dependent packages - 21 dependent repositories - 65.3 thousand downloads last month - 38 stars on GitHub - 2 maintainers
Top 2.2% on pypi.org
cyvcf2 0.30.28 💰
fast vcf parsing with cython + htslib
93 versions - Latest release: 4 months ago - 43 dependent packages - 99 dependent repositories - 62.7 thousand downloads last month - 357 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
hail 0.2.130
Scalable library for exploring and analyzing genomic data.
150 versions - Latest release: about 1 month ago - 10 dependent packages - 43 dependent repositories - 40.5 thousand downloads last month - 925 stars on GitHub - 2 maintainers
Top 3.0% on pypi.org
hgvs 1.5.4
HGVS Parser, Formatter, Mapper, Validator
73 versions - Latest release: over 1 year ago - 7 dependent packages - 34 dependent repositories - 35.2 thousand downloads last month - 232 stars on GitHub - 2 maintainers
Top 4.7% on pypi.org
mudata 0.2.3
Multimodal omics analysis framework
9 versions - Latest release: 12 months ago - 24 dependent packages - 12 dependent repositories - 35.1 thousand downloads last month - 65 stars on GitHub - 1 maintainer
Top 9.0% on pypi.org
gencove 2.16.3
Gencove API and CLI tool
120 versions - Latest release: 13 days ago - 1 dependent repositories - 22 thousand downloads last month - 3 stars on GitHub - 1 maintainer
Top 5.9% on pypi.org
bed-reader 1.0.4
Read and write the PLINK BED format, simply and efficiently.
33 versions - Latest release: 27 days ago - 7 dependent packages - 4 dependent repositories - 22 thousand downloads last month - 67 stars on GitHub - 2 maintainers
Top 1.9% on pypi.org
galaxy-util 24.0.2
Galaxy generic utilities
36 versions - Latest release: 15 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 1.6% on pypi.org
galaxy-tool-util 24.0.2
Galaxy tool and tool dependency utilities
60 versions - Latest release: 15 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 3.3% on pypi.org
ncls 0.0.68
A fast interval tree-like implementation in C, wrapped for the Python ecosystem.
67 versions - Latest release: about 1 year ago - 15 dependent packages - 42 dependent repositories - 19.5 thousand downloads last month - 199 stars on GitHub - 1 maintainer
Top 4.2% on pypi.org
eutils 0.6.0
"Python interface to NCBI's eutilities API"
27 versions - Latest release: over 4 years ago - 6 dependent packages - 24 dependent repositories - 18.7 thousand downloads last month - 55 stars on GitHub - 2 maintainers
Top 2.7% on pypi.org
pyranges 0.1.1
GenomicRanges for Python.
120 versions - Latest release: 12 days ago - 56 dependent packages - 56 dependent repositories - 15.5 thousand downloads last month - 389 stars on GitHub - 2 maintainers
Top 6.7% on pypi.org
igv-notebook 0.5.2
Package for embedding the igv.js genome visualization in IPython notebooks
16 versions - Latest release: about 1 year ago - 3 dependent packages - 3 dependent repositories - 7.8 thousand downloads last month - 55 stars on GitHub - 1 maintainer
Top 2.5% on pypi.org
tskit 0.5.6
The tree sequence toolkit.
36 versions - Latest release: 8 months ago - 16 dependent packages - 54 dependent repositories - 7.75 thousand downloads last month - 144 stars on GitHub - 2 maintainers
Top 5.5% on pypi.org
arvados-python-client 2.7.2
Arvados client library
689 versions - Latest release: about 1 month ago - 11 dependent repositories - 6.93 thousand downloads last month - 365 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
aegea 4.4.1 💰
Amazon Web Services Operator Interface
208 versions - Latest release: 12 months ago - 6 dependent repositories - 6.68 thousand downloads last month - 68 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
goatools 1.4.4
Python scripts to find enrichment of GO terms
48 versions - Latest release: about 1 month ago - 18 dependent packages - 51 dependent repositories - 5.71 thousand downloads last month - 727 stars on GitHub - 1 maintainer
Top 5.3% on pypi.org
ga4gh.vrs 0.8.5
"GA4GH Variation Representation Specification (VRS) reference implementation (https://github.com/...
51 versions - Latest release: 7 months ago - 7 dependent packages - 10 dependent repositories - 5.35 thousand downloads last month - 46 stars on GitHub - 7 maintainers
Top 2.1% on pypi.org
msprime 1.3.1
Simulate genealogical trees and genomic sequence data using population genetic models
58 versions - Latest release: 3 months ago - 16 dependent packages - 83 dependent repositories - 5.33 thousand downloads last month - 167 stars on GitHub - 2 maintainers
Top 2.1% on pypi.org
mappy 2.28
Minimap2 python binding
29 versions - Latest release: about 2 months ago - 27 dependent packages - 49 dependent repositories - 4.87 thousand downloads last month - 1,691 stars on GitHub - 1 maintainer
pyopal 0.6.0
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.
16 versions - Latest release: 14 days ago - 1 dependent package - 1 dependent repositories - 4.16 thousand downloads last month - 7 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
pysnptools 0.5.11
PySnpTools
47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
Top 2.1% on pypi.org
cooler 0.9.3
Sparse binary format for genomic interaction matrices.
46 versions - Latest release: 8 months ago - 22 dependent packages - 64 dependent repositories - 3.55 thousand downloads last month - 189 stars on GitHub - 2 maintainers
Top 3.1% on pypi.org
galaxy-containers 22.1.1
Galaxy Container Modeling and Interaction Abstractions
6 versions - Latest release: over 1 year ago - 4 dependent packages - 13 dependent repositories - 2.96 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
pytrimal 0.7.0
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.
17 versions - Latest release: 10 months ago - 1 dependent repositories - 2.57 thousand downloads last month - 16 stars on GitHub - 1 maintainer
pytantan 0.1.1
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and ...
2 versions - Latest release: 7 days ago - 2.5 thousand downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
gnomad 0.8.0
Hail utilities for the Genome Aggregation Database
13 versions - Latest release: about 1 month ago - 1 dependent repositories - 2.48 thousand downloads last month - 82 stars on GitHub - 2 maintainers
fwdpy11 0.22.2
Forward-time population genetic simulation in Python
106 versions - Latest release: about 1 month ago - 1 dependent repositories - 2.45 thousand downloads last month - 27 stars on GitHub - 1 maintainer
pyfamsa 0.4.0
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
8 versions - Latest release: 16 days ago - 3 dependent packages - 2.44 thousand downloads last month - 21 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
pycirclize 1.5.0
Circular visualization in Python
20 versions - Latest release: 4 days ago - 7 dependent packages - 1 dependent repositories - 2.39 thousand downloads last month - 629 stars on GitHub - 1 maintainer
Top 7.9% on pypi.org
pyrle 0.0.40
Numeric run length encoding for Python.
40 versions - Latest release: 21 days ago - 5 dependent packages - 13 dependent repositories - 2.39 thousand downloads last month - 16 stars on GitHub - 1 maintainer
Top 3.4% on pypi.org
deeptools 3.5.5
Useful tools for exploring deep sequencing data.
60 versions - Latest release: 3 months ago - 6 dependent packages - 36 dependent repositories - 2.33 thousand downloads last month - 645 stars on GitHub - 3 maintainers
Top 3.8% on pypi.org
umi-tools 1.1.4
umi_tools: Tools for UMI analyses
39 versions - Latest release: about 1 year ago - 4 dependent packages - 5 dependent repositories - 2.15 thousand downloads last month - 461 stars on GitHub - 2 maintainers
pegasusio 0.9.0
Pegasusio is a Python package for reading / writing single-cell genomics data
47 versions - Latest release: 4 months ago - 2 dependent packages - 3 dependent repositories - 2.06 thousand downloads last month - 7 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
kipoi 0.8.6
Kipoi: model zoo for genomics
73 versions - Latest release: almost 2 years ago - 2 dependent packages - 6 dependent repositories - 2.01 thousand downloads last month - 229 stars on GitHub - 4 maintainers
genomeworks-cuda-10-0 2021.2.0
NVIDIA genomics python libraries and utiliites
221 versions - Latest release: about 3 years ago - 1 dependent repositories - 2 thousand downloads last month - 276 stars on GitHub - 1 maintainer
kipoi-utils 0.7.7
kipoi-utils: utils used in various packages related to kipoi
27 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 1.99 thousand downloads last month - 0 stars on GitHub - 3 maintainers
kipoi-conda 0.3.1
kipoi-conda: conda/pip related functionality used by Kipoi
12 versions - Latest release: about 2 years ago - 1 dependent package - 3 dependent repositories - 1.92 thousand downloads last month - 0 stars on GitHub - 3 maintainers
Top 5.5% on pypi.org
kipoiseq 0.7.1
kipoiseq: sequence-based data-loaders for Kipoi
21 versions - Latest release: over 2 years ago - 3 dependent packages - 62 dependent repositories - 1.9 thousand downloads last month - 76 stars on GitHub - 5 maintainers
Top 9.0% on pypi.org
hicstuff 3.2.3
General purpose stuff to generate and handle Hi-C data in its simplest form.
130 versions - Latest release: 8 days ago - 1 dependent package - 4 dependent repositories - 1.89 thousand downloads last month - 35 stars on GitHub - 5 maintainers
Top 5.1% on pypi.org
pybbi 0.4.0
Python bindings to the UCSC source for Big Binary Indexed (bigWig/bigBed) files.
14 versions - Latest release: about 1 month ago - 2 dependent packages - 9 dependent repositories - 1.83 thousand downloads last month - 26 stars on GitHub - 1 maintainer
sbsgenerator 1.0.5
Blazingly fast SBS matrix generator library
7 versions - Latest release: 2 months ago - 1.81 thousand downloads last month - 0 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
jcvi 1.4.12
Python utility libraries on genome assembly, annotation and comparative genomics
110 versions - Latest release: 11 days ago - 1 dependent package - 3 dependent repositories - 1.75 thousand downloads last month - 702 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
cgatcore 0.6.16
cgatcore : the Computational Genomics Analysis Toolkit
32 versions - Latest release: about 2 months ago - 2 dependent packages - 8 dependent repositories - 1.73 thousand downloads last month - 31 stars on GitHub - 2 maintainers
Top 6.9% on pypi.org
cogent3 2024.5.7a1
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems ...
21 versions - Latest release: 15 days ago - 5 dependent packages - 5 dependent repositories - 1.72 thousand downloads last month - 95 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
peddy 0.4.8 💰
pleasingly pythonic pedigree manipulation
27 versions - Latest release: almost 3 years ago - 7 dependent repositories - 1.69 thousand downloads last month - 127 stars on GitHub - 1 maintainer
geneweaver-db 0.3.8
Database Interaction Services for GeneWeaver
46 versions - Latest release: 12 days ago - 1.66 thousand downloads last month - 4 stars on GitHub - 1 maintainer
nmdc-schema 10.3.0
Schema resources for the National Microbiome Data Collaborative (NMDC)
74 versions - Latest release: 7 days ago - 1.66 thousand downloads last month - 26 stars on GitHub - 4 maintainers
blasttools 0.1.16
Commands for turning blast queries into pandas dataframes.
6 versions - Latest release: 8 days ago - 1.63 thousand downloads last month - 0 stars on GitHub - 1 maintainer
genomeworks-cuda-10-1 2021.2.2
NVIDIA genomics python libraries and utiliites
224 versions - Latest release: about 3 years ago - 1 dependent repositories - 1.62 thousand downloads last month - 276 stars on GitHub - 1 maintainer
agct 0.1.0.dev1
Another Genome Conversion Tool: Python frontend to Rust chainfile crate
2 versions - Latest release: 4 months ago - 1 dependent package - 1.56 thousand downloads last month - 2 stars on GitHub - 3 maintainers
Top 9.9% on pypi.org
arvados-cwl-runner 2.7.2
Arvados Common Workflow Language runner
361 versions - Latest release: about 1 month ago - 5 dependent repositories - 1.56 thousand downloads last month - 365 stars on GitHub - 1 maintainer
greatbrowser 0.0.1
Automate Stanford's GREAT browser
6 versions - Latest release: 11 days ago - 1.44 thousand downloads last month - 0 stars on GitHub - 1 maintainer
arvados_fuse 2.7.2
Arvados FUSE driver
503 versions - Latest release: about 1 month ago - 2 dependent repositories - 1.28 thousand downloads last month - 365 stars on GitHub - 1 maintainer
genomehubs 2.8.8
GenomeHubs
152 versions - Latest release: 5 days ago - 1 dependent repositories - 1.27 thousand downloads last month - 13 stars on GitHub - 1 maintainer
Top 4.9% on pypi.org
pytabix 0.0.2
Python interface for tabix
2 versions - Latest release: about 9 years ago - 10 dependent packages - 54 dependent repositories - 1.26 thousand downloads last month - 82 stars on GitHub - 1 maintainer
hic2cool 1.0.1
Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (f...
28 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 1.19 thousand downloads last month - 53 stars on GitHub - 4 maintainers
pegasuspy 1.9.1
Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells
42 versions - Latest release: 2 months ago - 1 dependent repositories - 1.17 thousand downloads last month - 69 stars on GitHub - 3 maintainers
genomicsdb 0.0.9.13
Experimental Python Bindings for querying GenomicsDB
18 versions - Latest release: 9 days ago - 1 dependent repositories - 1.06 thousand downloads last month - 1 stars on GitHub - 3 maintainers
phykit 1.19.4
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
65 versions - Latest release: 19 days ago - 1 dependent repositories - 1.06 thousand downloads last month - 46 stars on GitHub - 1 maintainer
genomeworks-cuda-11-1 2021.2.2
NVIDIA genomics python libraries and utiliites
98 versions - Latest release: about 3 years ago - 1 dependent repositories - 995 downloads last month - 273 stars on GitHub - 1 maintainer
dysgu 1.6.3
Structural variant calling
28 versions - Latest release: about 2 months ago - 1 dependent repositories - 954 downloads last month - 85 stars on GitHub - 1 maintainer
genomic-benchmarks 0.0.9
Genomic Benchmarks
8 versions - Latest release: almost 2 years ago - 1 dependent repositories - 949 downloads last month - 87 stars on GitHub - 3 maintainers
Top 8.9% on pypi.org
igv-reports 1.12.0
Creates self-contained html pages for visual variant review with IGV (igv.js).
28 versions - Latest release: 3 months ago - 1 dependent repositories - 935 downloads last month - 320 stars on GitHub - 1 maintainer
Top 6.5% on pypi.org
harmony-pytorch 0.1.8
Pytorch implementation of Harmony algorithm on single-cell sequencing data integration
9 versions - Latest release: 5 months ago - 8 dependent packages - 12 dependent repositories - 928 downloads last month - 40 stars on GitHub - 2 maintainers
Top 9.0% on pypi.org
enformer-pytorch 0.8.8 💰
Enformer - Pytorch
99 versions - Latest release: 5 months ago - 1 dependent repositories - 902 downloads last month - 373 stars on GitHub - 1 maintainer
lightmotif 0.6.0
PyO3 bindings and Python interface to lightmotif, a library for platform-accelerated biological m...
7 versions - Latest release: 5 months ago - 898 downloads last month - 33 stars on GitHub - 1 maintainer
fgpyo 0.3.0 💰
Python bioinformatics and genomics library
14 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 877 downloads last month - 23 stars on GitHub - 3 maintainers
Top 4.3% on pypi.org
ncbi-genome-download 0.3.3
Download genome files from the NCBI FTP server.
25 versions - Latest release: 10 months ago - 3 dependent packages - 8 dependent repositories - 851 downloads last month - 886 stars on GitHub - 2 maintainers
cool-seq-tool 0.1.13
Common Operations On Lots-of Sequences Tool.
21 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 849 downloads last month - 4 stars on GitHub - 2 maintainers
Top 9.8% on pypi.org
tnseq-transit 3.3.4
TRANSIT is a tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface...
50 versions - Latest release: 3 months ago - 3 dependent repositories - 846 downloads last month - 16 stars on GitHub - 2 maintainers
Top 3.6% on pypi.org
galaxy-objectstore 24.0.2
Galaxy objectstore framework and plugins
25 versions - Latest release: 15 days ago - 5 dependent packages - 13 dependent repositories - 824 downloads last month - 1,315 stars on GitHub - 3 maintainers
py-fasta-validator 0.6
A small, lightweight, fast fasta validator written in C
4 versions - Latest release: over 1 year ago - 1 dependent repositories - 821 downloads last month - 6 stars on GitHub - 1 maintainer
fastlmmclib 0.0.3
Fast GWAS C library
3 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 810 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.9% on pypi.org
galaxy-data 24.0.2
Galaxy datatype framework and datatypes
24 versions - Latest release: 15 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
geneweaver-core 0.9.1
The core of the Jax-Geneweaver Python library
47 versions - Latest release: about 1 month ago - 4 dependent packages - 1 dependent repositories - 772 downloads last month - 4 stars on GitHub - 1 maintainer
clipkit 2.3.0
Alignment trimming software for phylogenetics.
44 versions - Latest release: 23 days ago - 1 dependent repositories - 728 downloads last month - 52 stars on GitHub - 1 maintainer
strkit-rust-ext 0.10.0
A short tandem repeat (STR) genotyping and analysis toolkit for long reads
10 versions - Latest release: 3 months ago - 1 dependent package - 726 downloads last month - 2 stars on GitHub - 1 maintainer
variantworks 0.0.0
NVIDIA genomics python libraries and utiliites
174 versions - Latest release: about 4 years ago - 1 dependent repositories - 725 downloads last month - 43 stars on GitHub - 1 maintainer
genomeworks-cuda-9-0 0.5.3
NVIDIA genomics python libraries and utiliites
150 versions - Latest release: over 3 years ago - 1 dependent repositories - 692 downloads last month - 276 stars on GitHub - 1 maintainer
Top 8.2% on pypi.org
fastlmm 0.6.8
Fast GWAS
52 versions - Latest release: 22 days ago - 1 dependent package - 7 dependent repositories - 680 downloads last month - 43 stars on GitHub - 4 maintainers
Top 9.4% on pypi.org
eggnog-mapper 2.1.12
Fast functional annotation of novel sequences using eggNOG orthology assignments.
27 versions - Latest release: 9 months ago - 4 dependent repositories - 680 downloads last month - 521 stars on GitHub - 1 maintainer
cptac 1.5.13
Python packaging for CPTAC data
59 versions - Latest release: 3 months ago - 1 dependent repositories - 673 downloads last month - 79 stars on GitHub - 2 maintainers
genomeworks-cuda-9-2 0.5.3
NVIDIA genomics python libraries and utiliites
155 versions - Latest release: over 3 years ago - 1 dependent repositories - 669 downloads last month - 276 stars on GitHub - 1 maintainer
Top 3.8% on pypi.org
galaxy-job-metrics 24.0.2
Galaxy job metrics
22 versions - Latest release: 15 days ago - 3 dependent packages - 10 dependent repositories - 665 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 6.8% on pypi.org
pyfastaq 3.17.0
Script to manipulate FASTA and FASTQ files, plus API for developers
21 versions - Latest release: over 6 years ago - 42 dependent repositories - 646 downloads last month - 68 stars on GitHub - 1 maintainer
bamnostic 1.1.10
Pure Python, OS-agnostic Binary Alignment Map (BAM) random access and parsing tool
54 versions - Latest release: about 1 year ago - 3 dependent packages - 1 dependent repositories - 643 downloads last month - 94 stars on GitHub - 1 maintainer
pygenomeviz 0.4.4
A genome visualization python package for comparative genomics
24 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 633 downloads last month - 232 stars on GitHub - 1 maintainer
pyfastani 0.5.1
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estima...
10 versions - Latest release: 3 months ago - 1 dependent repositories - 616 downloads last month - 14 stars on GitHub - 1 maintainer
Top 9.8% on pypi.org
genomeworks-cuda-10-2 2021.2.2
NVIDIA genomics python libraries and utiliites
104 versions - Latest release: about 3 years ago - 1 dependent repositories - 615 downloads last month - 276 stars on GitHub - 1 maintainer
strkit 0.14.0
A toolkit for analyzing variation in short(ish) tandem repeats.
100 versions - Latest release: 4 months ago - 1 dependent repositories - 614 downloads last month - 2 stars on GitHub - 1 maintainer
pyranges1 1.0.1
GenomicRanges for Python.
6 versions - Latest release: 10 days ago - 1 dependent package - 610 downloads last month - 5 stars on GitHub - 2 maintainers
wgd 2.0.38
wgd
28 versions - Latest release: 11 days ago - 609 downloads last month - 17 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
truvari 4.2.2
Structural variant comparison tool for VCFs
26 versions - Latest release: about 2 months ago - 2 dependent repositories - 605 downloads last month - 295 stars on GitHub - 1 maintainer
geneweaver-testing 0.1.2
A library to standardize testing of GeneWeaver pacakges.
22 versions - Latest release: 2 months ago - 1 dependent repositories - 604 downloads last month - 4 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics 351 python 100 sequencing 64 ngs 45 dna 39 genetics 38 pipeline 37 workflow 37 science 35 workflow-engine 32 visualization 31 biology 29 hacktoberfest 27 usegalaxy 26 Galaxy 21 deep-learning 19 machine-learning 19 alignment 19 metagenomics 18 hi-c 17 genome 16 evolution 15 bioinformatics-pipeline 15 phylogenetics 14 genomics-visualization 14 single-cell 14 rna-seq 14 vcf 14 sequence 14 cancer 13 gwas 13 deep learning 12 computational-biology 12 protein 12 next-generation-sequencing 11 bacteria 11 computational biology 11 comparative-genomics 11 microbial-genomics 11 variant 11 mapping 11 transcriptomics 11 rna 10 analysis 10 microbial 10 proteomics 10 variants 10 python-api 10 poa 10 partial-order-alignment 10 nvidia 10 gpu 10 cuda 10 computational 10 sequence-alignment 10 assembly 9 epigenomics 9 research 9 microbiology 8 variation 8 genome-analysis 8 data 8 cloud 8 motif 8 pathogen 8 machine learning 8 global-health 8 genomic-data-analysis 8 infectious-diseases 8 aws 7 fasta 7 genomes 7 docker 7 variant-calling 7 data-science 7 python3 7 python-library 7 structural-variation 7 development 7 cancer-genomics 7 phylogenomics 7 bioinformatics-tool 7 artificial intelligence 7 annotation 6 galaxy 6 gtf 6 reference 6 cooler 6 chromatin 6 Hi-C 6 population-genetics 6 biopython 6 variant-analysis 6 long-reads 6 model zoo 6 phage 6 genbank 6 phylogeny 6 sequence-analysis 6 genomic-data-science 6