bioconductor.org "StatisticalMethod" keyword
View the packages on the bioconductor.org package registry that are tagged with the "StatisticalMethod" keyword.
nucleoSim 1.36.0
Generate synthetic nucleosome maps5 versions - Latest release: 3 months ago - 1 dependent package - 14.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
onlineFDR 2.16.0
Online error rate control5 versions - Latest release: 3 months ago - 8.96 thousand downloads total - 14 stars on GitHub - 1 maintainer
BioCor 1.32.0
Functional similarities5 versions - Latest release: 2 months ago - 18.6 thousand downloads total - 14 stars on GitHub - 1 maintainer
HDTD 1.42.0
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Trans...5 versions - Latest release: 3 months ago - 17.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
SAIGEgds 2.8.0
Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association S...7 versions - Latest release: 2 months ago - 12.5 thousand downloads total - 7 stars on GitHub - 1 maintainer
SomaticSignatures 2.44.0
Somatic Signatures5 versions - Latest release: 3 months ago - 1 dependent package - 51.1 thousand downloads total - 22 stars on GitHub - 1 maintainer
Top 9.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 35 thousand downloads total - 195 stars on GitHub - 1 maintainer
muscat 1.22.0
Multi-sample multi-group scRNA-seq data analysis tools6 versions - Latest release: 3 months ago - 1 dependent package - 35 thousand downloads total - 195 stars on GitHub - 1 maintainer
peco 1.20.0
A Supervised Approach for **P**r**e**dicting **c**ell Cycle Pr**o**gression using scRNA-seq data5 versions - Latest release: 2 months ago - 8.14 thousand downloads total - 12 stars on GitHub - 1 maintainer
DESpace 2.0.0
DESpace: a framework to discover spatially variable genes and differential spatial patterns acros...6 versions - Latest release: 3 months ago - 5.21 thousand downloads total - 4 stars on GitHub - 1 maintainer
DifferentialRegulation 2.6.0
Differentially regulated genes from scRNA-seq data9 versions - Latest release: 3 months ago - 6.18 thousand downloads total - 11 stars on GitHub - 1 maintainer
QUBIC 1.36.0
An R package for qualitative biclustering in support of gene co-expression analyses5 versions - Latest release: 3 months ago - 2 dependent packages - 30.5 thousand downloads total - 3 stars on GitHub - 1 maintainer
HIBAG 1.44.0
HLA Genotype Imputation with Attribute Bagging7 versions - Latest release: 3 months ago - 27.1 thousand downloads total - 28 stars on GitHub - 1 maintainer
IntramiRExploreR 1.30.0
Predicting Targets for Drosophila Intragenic miRNAs5 versions - Latest release: 2 months ago - 11.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
selectKSigs 1.20.0
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation5 versions - Latest release: 3 months ago - 7.99 thousand downloads total - 0 stars on GitHub - 1 maintainer
lefser 1.18.0
R implementation of the LEfSE method for microbiome biomarker discovery7 versions - Latest release: 3 months ago - 1 dependent package - 34 thousand downloads total - 42 stars on GitHub - 1 maintainer
HiLDA 1.22.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...5 versions - Latest release: 2 months ago - 1 dependent package - 10.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
swfdr 1.34.0
Estimation of the science-wise false discovery rate and the false discovery rate conditional on c...5 versions - Latest release: 3 months ago - 13.4 thousand downloads total - 3 stars on GitHub - 2 maintainers
deconvR 1.14.0
Simulation and Deconvolution of Omic Profiles5 versions - Latest release: 3 months ago - 8.85 thousand downloads total - 9 stars on GitHub - 1 maintainer
flowGraph 1.16.0
Identifying differential cell populations in flow cytometry data accounting for marker frequency5 versions - Latest release: 3 months ago - 7.12 thousand downloads total - 0 stars on GitHub - 1 maintainer
FeatSeekR 1.8.0
FeatSeekR an R package for unsupervised feature selection5 versions - Latest release: 2 months ago - 4.33 thousand downloads total - 1 stars on GitHub - 1 maintainer
BioQC 1.36.0
Detect tissue heterogeneity in expression profiles with gene sets5 versions - Latest release: 2 months ago - 24.3 thousand downloads total - 5 stars on GitHub - 1 maintainer
PING 2.51.0
Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data5 versions - Latest release: 3 months ago - 28.5 thousand downloads total - 1 maintainer
Top 7.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 27 thousand downloads total - 87 stars on GitHub - 1 maintainer
TitanCNA 1.45.0
Subclonal copy number and LOH prediction from whole genome sequencing of tumours5 versions - Latest release: 3 months ago - 27 thousand downloads total - 87 stars on GitHub - 1 maintainer
limpca 1.4.0
An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family ...3 versions - Latest release: 2 months ago - 3.24 thousand downloads total - 2 stars on GitHub - 1 maintainer
ClusterSignificance 1.36.0
The ClusterSignificance package provides tools to assess if class clusters in dimensionality redu...5 versions - Latest release: 3 months ago - 15.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
granulator 1.16.0
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data5 versions - Latest release: 3 months ago - 1 dependent package - 11.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
netboost 2.16.0
Network Analysis Supported by Boosting5 versions - Latest release: 3 months ago - 8.54 thousand downloads total - 1 maintainer
treeclimbR 1.4.0
An algorithm to find optimal signal levels in a tree4 versions - Latest release: 3 months ago - 3.37 thousand downloads total - 20 stars on GitHub - 1 maintainer
plotGrouper 1.26.0
Shiny app GUI wrapper for ggplot with built-in statistical analysis5 versions - Latest release: 3 months ago - 9.69 thousand downloads total - 6 stars on GitHub - 1 maintainer
ClusterJudge 1.30.0
Judging Quality of Clustering Methods using Mutual Information5 versions - Latest release: 3 months ago - 12.6 thousand downloads total - 1 maintainer
receptLoss 1.20.0
Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors5 versions - Latest release: 3 months ago - 7.34 thousand downloads total - 1 maintainer
APL 1.12.0
Association Plots6 versions - Latest release: 3 months ago - 7.5 thousand downloads total - 16 stars on GitHub - 1 maintainer
stageR 1.30.1
stageR: stage-wise analysis of high throughput gene expression data in R6 versions - Latest release: about 2 months ago - 2 dependent packages - 26.9 thousand downloads total - 1 maintainer
CytoGLMM 1.16.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments5 versions - Latest release: 3 months ago - 1 dependent package - 7.55 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 4.9% on bioconductor.org
8 versions - Latest release: 3 months ago - 5 dependent packages - 63.4 thousand downloads total - 68 stars on GitHub - 1 maintainer
CATALYST 1.32.0
Cytometry dATa anALYSis Tools8 versions - Latest release: 3 months ago - 5 dependent packages - 63.4 thousand downloads total - 68 stars on GitHub - 1 maintainer
methylclock 1.14.0
Methylclock - DNA methylation-based clocks5 versions - Latest release: 3 months ago - 13 thousand downloads total - 40 stars on GitHub - 1 maintainer
pageRank 1.18.0
Temporal and Multiplex PageRank for Gene Regulatory Network Analysis5 versions - Latest release: 3 months ago - 7.41 thousand downloads total - 0 stars on GitHub - 1 maintainer
DExMA 1.16.0
Differential Expression Meta-Analysis6 versions - Latest release: 3 months ago - 7.27 thousand downloads total - 1 maintainer
dStruct 1.14.0
Identifying differentially reactive regions from RNA structurome profiling data5 versions - Latest release: 3 months ago - 5.63 thousand downloads total - 2 stars on GitHub - 1 maintainer
beer 1.12.0
Bayesian Enrichment Estimation in R5 versions - Latest release: 3 months ago - 6.05 thousand downloads total - 11 stars on GitHub - 1 maintainer
deltaCaptureC 1.22.0
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data6 versions - Latest release: 3 months ago - 8.42 thousand downloads total - 1 maintainer
SPOTlight 1.12.1
`SPOTlight`: Spatial Transcriptomics Deconvolution8 versions - Latest release: 21 days ago - 14.3 thousand downloads total - 186 stars on GitHub - 1 maintainer
kmcut 1.2.0
Optimized Kaplan Meier analysis and identification and validation of prognostic biomarkers2 versions - Latest release: 3 months ago - 1.96 thousand downloads total - 1 maintainer
MAI 1.14.0
Mechanism-Aware Imputation5 versions - Latest release: 3 months ago - 6.34 thousand downloads total - 2 stars on GitHub - 1 maintainer
pareg 1.12.0
Pathway enrichment using a regularized regression approach5 versions - Latest release: 3 months ago - 4.14 thousand downloads total - 7 stars on GitHub - 1 maintainer
randPack 1.54.0
Randomization routines for Clinical Trials5 versions - Latest release: 3 months ago - 26 thousand downloads total - 1 maintainer
switchBox 1.44.0
Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair ...5 versions - Latest release: 3 months ago - 1 dependent package - 23 thousand downloads total - 3 maintainers
zitools 1.2.0
Analysis of zero-inflated count data2 versions - Latest release: 3 months ago - 1.71 thousand downloads total - 0 stars on GitHub - 1 maintainer
tpSVG 1.4.0
Thin plate models to detect spatially variable genes4 versions - Latest release: 3 months ago - 3.22 thousand downloads total - 2 stars on GitHub - 1 maintainer
decoupleR 2.14.0
decoupleR: Ensemble of computational methods to infer biological activities from omics data6 versions - Latest release: 3 months ago - 3 dependent packages - 54.6 thousand downloads total - 256 stars on GitHub - 1 maintainer
CytoDx 1.28.0
Robust prediction of clinical outcomes using cytometry data without cell gating5 versions - Latest release: 3 months ago - 12.5 thousand downloads total - 1 maintainer
MCbiclust 1.32.0
Massive correlating biclusters for gene expression data and associated methods5 versions - Latest release: 3 months ago - 15.2 thousand downloads total - 1 maintainer
signeR 2.10.0
Empirical Bayesian approach to mutational signature discovery5 versions - Latest release: 3 months ago - 18.7 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 4.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 117 thousand downloads total - 615 stars on GitHub - 1 maintainer
infercnv 1.24.0
Infer Copy Number Variation from Single-Cell RNA-Seq Data6 versions - Latest release: 3 months ago - 117 thousand downloads total - 615 stars on GitHub - 1 maintainer
RGSEA 1.42.0
Random Gene Set Enrichment Analysis5 versions - Latest release: 3 months ago - 22 thousand downloads total - 1 maintainer
gsean 1.28.0
Gene Set Enrichment Analysis with Networks5 versions - Latest release: 3 months ago - 12.3 thousand downloads total - 1 maintainer
CyTOFpower 1.13.1
Power analysis for CyTOF experiments5 versions - Latest release: 3 months ago - 4.14 thousand downloads total - 1 maintainer
consICA 2.6.0
consensus Independent Component Analysis5 versions - Latest release: 2 months ago - 6.71 thousand downloads total - 0 stars on GitHub - 1 maintainer
MetID 1.26.0
Network-based prioritization of putative metabolite IDs5 versions - Latest release: 3 months ago - 9.55 thousand downloads total - 1 stars on GitHub - 1 maintainer
scoup 1.2.0
Simulate Codons with Darwinian Selection Modelled as an OU Process2 versions - Latest release: 3 months ago - 1.63 thousand downloads total - 0 stars on GitHub - 1 maintainer
POMA 1.18.0
Tools for Omics Data Analysis5 versions - Latest release: 3 months ago - 1 dependent package - 10.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
Summix 2.14.0
Summix2: A suite of methods to estimate, adjust, and leverage substructure in genetic summary data5 versions - Latest release: 3 months ago - 5.86 thousand downloads total - 1 maintainer
Top 7.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 37.4 thousand downloads total - 1 maintainer
Mulcom 1.58.0
Calculates Mulcom test5 versions - Latest release: 3 months ago - 37.4 thousand downloads total - 1 maintainer
treekoR 1.16.0
Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations5 versions - Latest release: 3 months ago - 6.81 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 66.5 thousand downloads total - 38 stars on GitHub - 1 maintainer
GENESIS 2.38.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...5 versions - Latest release: 3 months ago - 1 dependent package - 66.5 thousand downloads total - 38 stars on GitHub - 1 maintainer
midasHLA 1.16.0
R package for immunogenomics data handling and association analysis5 versions - Latest release: 3 months ago - 9.35 thousand downloads total - 1 maintainer
npGSEA 1.44.0
Permutation approximation methods for gene set enrichment analysis (non-permutation GSEA)5 versions - Latest release: 3 months ago - 22.1 thousand downloads total - 1 maintainer
AWFisher 1.22.0
An R package for fast computing for adaptively weighted fisher's method5 versions - Latest release: 3 months ago - 11.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
RJMCMCNucleosomes 1.30.0
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-rea...4 versions - Latest release: 8 months ago - 11.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
EBSeqHMM 1.38.0 removed
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments3 versions - Latest release: about 1 year ago - 17.8 thousand downloads total - 1 maintainer
NeighborNet 1.22.0 removed
Neighbor_net analysis3 versions - Latest release: about 1 year ago - 4.56 thousand downloads total - 1 maintainer
FunChIP 1.30.0 removed
Clustering and Alignment of ChIP-Seq peaks based on their shapes3 versions - Latest release: about 1 year ago - 10 thousand downloads total - 1 maintainer
iterClust 1.26.0 removed
Iterative Clustering3 versions - Latest release: about 1 year ago - 8.08 thousand downloads total - 1 stars on GitHub - 1 maintainer
LineagePulse 1.21.0 removed
Differential expression analysis and model fitting for single-cell RNA-seq data2 versions - Latest release: over 1 year ago - 7.08 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 5.1% on bioconductor.org
2 versions - Latest release: over 1 year ago - 56.5 thousand downloads total - 1 maintainer
GISPA 1.26.0 removed
GISPA: Method for Gene Integrated Set Profile Analysis2 versions - Latest release: over 1 year ago - 56.5 thousand downloads total - 1 maintainer
NBSplice 1.18.0 removed
Negative Binomial Models to detect Differential Splicing1 version - Latest release: almost 2 years ago - 5.1 thousand downloads total - 1 maintainer
IsoBayes 1.2.7
IsoBayes: Single Isoform protein inference Method via Bayesian Analyses5 versions - Latest release: 9 months ago - 2.24 thousand downloads total - 7 stars on GitHub - 1 maintainer
Related Keywords
Software
177
GeneExpression
59
DifferentialExpression
45
Sequencing
43
ImmunoOncology
36
RNASeq
32
Clustering
30
Visualization
25
Genetics
23
MultipleComparison
23
Regression
22
SingleCell
21
Classification
21
Preprocessing
19
Microarray
18
Network
17
Bayesian
15
BiologicalQuestion
15
Transcriptomics
15
BatchEffect
15
PrincipalComponent
14
Transcription
13
Normalization
12
GraphAndNetwork
12
DimensionReduction
12
FlowCytometry
11
Pathways
10
DNAMethylation
10
GenomeWideAssociation
10
GeneSetEnrichment
10
r
9
FeatureExtraction
8
AlternativeSplicing
7
MassSpectrometry
7
Coverage
7
DataImport
7
GenomicVariation
7
SNP
7
CellBasedAssays
7
CellBiology
7
DifferentialMethylation
7
Spatial
7
bioconductor
7
Proteomics
7
DifferentialSplicing
6
GeneRegulation
6
Survival
6
NetworkEnrichment
6
bioinformatics
6
QualityControl
6
Metabolomics
6
SomaticMutation
6
WholeGenome
6
Technology
5
Epigenetics
5
ResearchField
5
TimeCourse
5
MethylationArray
5
GeneTarget
5
BiomedicalInformatics
5
bioconductor-package
5
DNASeq
4
r-package
4
SystemsBiology
4
Infrastructure
4
WorkflowStep
4
KEGG
4
Microbiome
4
ExperimentalDesign
4
CopyNumberVariation
3
MethylSeq
3
HiddenMarkovModel
3
NetworkInference
3
Annotation
3
rstats
3
dna-methylation
2
statistics
2
missing-data
2
nucleosomes
2
machine-learning
2
GO
2
Alignment
2
snp
2
GenePrediction
2
FunctionalGenomics
2
methylation
2
simulation
2
ExomeSeq
2
MathematicalBiology
2
GenomeAnnotation
2
FunctionalPrediction
2
mRNAMicroarray
2
ChIPSeq
2
inheritance
2
MicroRNAArray
2
bioconductor-packages
2
mixed-model
1
10x-genomics
1
gwas
1
gds
1